Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq112 123 2e-23 >seq112 Length=380982 Score = 123 bits (136), Expect = 2e-23 Identities = 380/585 (65%), Gaps = 2/585 (0%) Strand=Plus/Plus Query 29876 AGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCC 29935 || || || |||| || || |||| || || || || | | ||||| ||| || || Sbjct 85221 AGTGGCTCGACGTGATTTAGATAGATATGCGCATCGCCAATGACGTGGATAAATTCACCA 85280 Query 29936 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29995 ||||||| || || || ||||| | | ||| || || | ||||||||| || ||| Sbjct 85281 GGTTCTAATCCAGTCACTTGAGCAACAAGACGCGTCAGCAGCGCGTAGCTGGCAATATTA 85340 Query 29996 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCC- 30054 || || || || ||||||||||| |||| | ||||| | |||||| || |||||||| Sbjct 85341 AATGGCACGCCAAGCCCCATGTCGGCCGAGCGTTGGTACATCTGACATGACAGCTCTCCA 85400 Query 30055 GTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTC 30114 | ||| || ||||| || || | |||||| || || | ||||| | | ||| Sbjct 85401 TTTGCT-ACATAAAATTGGCAAAACATGTGGCAAGGTGGTAATGCCATTTCGTTGAGGTC 85459 Query 30115 TTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTC 30174 | |||||||| || ||| ||| ||||| | |||| ||| | || | | | Sbjct 85460 TGCAGGGTTCCACGCCGACAGGATAATGCGACGGTCTGTTGGACTCTTACGTAGCTTTTG 85519 Query 30175 CACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTA 30234 | | | || |||||||| || || || | || || || ||||| ||| || Sbjct 85520 AATAACCTCTTCAAGCTGATCAACACCTTGACCAGTATAATCCGCATGCATGTTCGTATA 85579 Query 30235 CTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 30294 | ||||| ||||| | ||| || || || || |||||||| || ||||| |||| | Sbjct 85580 TTTAGCTCCAAAATGACGCCATTGAAAGCCATAAACCGGTCCAAGATCTCCTACTTCTCG 85639 Query 30295 GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTAC 30354 || || || | | || | | | || | || || ||| | ||||| || | | Sbjct 85640 AGTCTGGAGACCTCGGCTATCTAGATACTCACGAGATCCATTGCCATCCCATATGTGAAT 85699 Query 30355 CCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30414 |||| | ||| || | |||||| || || | ||||||| |||||||| Sbjct 85700 ATCCTTTTGCTGCAGCGTTTGAGCATTTGTGTCTCCACTAATAAACCACAATAGCTCCTC 85759 Query 30415 CACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30459 | | || | ||| || ||||| ||||| || || | ||||| Sbjct 85760 CGCTACACCTCGCCAGAATACCCTTTTGGTAGTCAGCAATGGAAA 85804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406294742066904