Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq731 129 1e-25 >seq731 Length=3487 Score = 129 bits (142), Expect = 1e-25 Identities = 180/251 (72%), Gaps = 1/251 (0%) Strand=Plus/Plus Query 6474 ACACGCACAACAACGGTGACCGGTTTTGACTGGTCGGCGATGGCCTGCAACGCTGCCGCC 6533 || |||||||| ||||| || ||||||| |||||||| || || | || | ||| Sbjct 630 ACGCGCACAACGACGGTCACGGGTTTTGCTTGGTCGGCAATTGCATCCAGAGAGCGGGCC 689 Query 6534 AGCGTGCCTTTTTTACCGGCCTTTGCAATTGCGCTCTGCACATTGGTAATCAGCACCGGT 6593 |||||||| | || | ||| | | ||| || |||| | ||||| ||| |||||| Sbjct 690 AGCGTGCCGGACTCGCCTGT-TTTCCGCTGGCGGTCAGCACGTCGGTAAGCAGGACCGGT 748 Query 6594 TTATTGAGGGGGAAGATTTCCGCATCCGCATCGCTGGCCGTGCAGACCAAGCCGACAATG 6653 |||||||||||||| | |||||| ||||| | | || ||||||| | ||||| Sbjct 749 TTATTGAGGGGGAACACGGACGCATCTGCATCATCGCCGGTACAGACCATACTTACAATT 808 Query 6654 GCAGTGGATACGGTGGAAATGACGCGGGTGCCGTCGTTAATCTCCAGCACCTGCACGCCG 6713 || ||| ||| || ||||| ||||||||| ||||| ||||| | || |||| ||| Sbjct 809 GCCGTGCTTACTGTTGAAATAGGGCGGGTGCCATCGTTGATCTCAACGACACGCACACCG 868 Query 6714 TGATGATAGTC 6724 || ||||| || Sbjct 869 TGGTGATAATC 879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104434478468628