Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_029120.1 Length=60875 Score E Sequences producing significant alignments: (Bits) Value seq1398 111 6e-20 >seq1398 Length=5533 Score = 111 bits (122), Expect = 6e-20 Identities = 436/672 (65%), Gaps = 28/672 (4%) Strand=Plus/Plus Query 11578 TTCGGGAACTACCGGGTGCAGAACGACGGTCAGCGCCATGCTCTGAGTCAGGCAAAATCC 11637 |||| || ||| |||| || |||||| ||||||||||| |||||| ||| || | Sbjct 7 TTCGCAAATTACGCGGTGGAGGGCGACGGCCAGCGCCATGCGCTGAGTATGGCCAAGAGC 66 Query 11638 ATCGCGGCAGAGCTGCATACCGGCTGCACGAATTTCGTGTTCAGCGGTAAACCTGGCACC 11697 |||| | | | ||||||| | | |||||| |||| || || || ||||| Sbjct 67 TACGCGCAAAATTTTGGCACCGGCTTTGCCAGTTTCGTTTTCACTGGAAAGCCCGGCACG 126 Query 11698 GGGAAAAATCACCTTGCAGCAGCGATTGGTAATCGGCTGATGGCGAAGGGGAGAAGCGTG 11757 |||||||| ||||| |||| || || || ||| ||| || | ||||| ||| || Sbjct 127 GGGAAAAACCACCTCTCAGCGGCCATCGGAAATTATCTGCTGAAGCAGGGGCGAACGGTC 186 Query 11758 ATTATCGTCACCGTGTCCGATGTCATGAGTGTGTTGCATGACG-GCTACGACAACGGCAA 11816 | || || || ||| | ||| | | || | | | | |||||||| | || | Sbjct 187 CTGATTGTGACAGTGCCGGATCTTACTC-TGCGCGCCCGGGCTTGCTACGACGAAGGGCA 245 Query 11817 GTCTGG---TGAGAAATTTTTACAGGAGCTTTGTGGCGTTGACCTTCTGGTCCTGGATGA 11873 ||| | || | | | | || || || || || || ||||| || ||||| Sbjct 246 GTCCGAATCTGCGC---TGCTGGATGACCTCTGCAAAGTGGATCTGCTGGTGCTCGATGA 302 Query 11874 AATTGGCATGCAGCGGGATACGCGCAACGAGCAGGTCATACTGAACCAGATCGTCGACCG 11933 | | ||||| ||||| || | ||| |||| | || | |||||||||| | || || Sbjct 303 AGTCGGCATTCAGCGCGAAAGCCGCGGCGAGAAAGTTTTGTTGAACCAGATTATTGATCG 362 Query 11934 CAGAACGGCATCACTGCGCAGTGTCGGGATGCTGACGAACCTGAATCACGCAGC----GA 11989 | | ||| || ||||| || || | ||||| ||||||||| | | || | Sbjct 363 CCGCCTGGCCGCAATGCGCCCGGTTGGCGTTCTGACCAACCTGAATTATGACGCACTGGT 422 Query 11990 TGAGCACACTCCTCGGCGAGCGGGTGATGGACCGTATGACCATGAACGGTGGTCGTTGGG 12049 |||| || | | |||| | | || || || || || |||| | || ||||| Sbjct 423 TGAG---AC-CGTTGGCGCGAGAGTTATCGATCGCCTGCGCATGGATAACGGAATTTGGG 478 Query 12050 TGAATTTTAACTGGGAGAGCTGGCGGTCAAACGTTGGGCGTCAGGGTA-TGTGA---GAA 12105 |||||||| |||||||||||| || |||||| | | | | | ||| | ||| Sbjct 479 TGAATTTTGACTGGGAGAGCTATCGCGGAAACGTCAGCCACCTGAGACCTGTTAAGTGAA 538 Query 12106 TTTTTGACGAGGTAAATTTTCGATGGAAACCGTATTGCATGCACTGAAAGCGATGGGTAA 12165 |||| || || |||| || |||||||| | || | ||||||||||| ||||| || Sbjct 539 TTTT-GAGGA--TAAAATT---ATGGAAACTATTTTAGACGCACTGAAAGCAATGGGCAA 592 Query 12166 AGCCAATTCTGTTGAACTGGCGGCGCGGCTTGATATC-AGCCGTGAAGAAGTTCTCAACG 12224 ||| | || ||| | || ||||| || |||||| |||| || |||| || ||| Sbjct 593 AGCTACTTACCGTGAGGTTGCAGCGCGCCTGGATATCGAGCC-TGTGGAAGCGCTGAACA 651 Query 12225 AACTGTGGGAAC 12236 ||| | |||| Sbjct 652 TGCTGCGCGAAC 663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194671090069428