Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq112 113 4e-20 >seq112 Length=380982 Score = 113 bits (124), Expect = 4e-20 Identities = 161/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 6546 GCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGG 6603 |||||| ||| || || |||||||||||||| || | ||| || | | || ||||| Sbjct 85225 GCTCGACGTGATTTAGATAGATATGCGCATCGCCAATGACG--TGGATAAATTCACCAGG 85282 Query 6604 AACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAA 6663 | || || || ||||| | | ||| ||||| ||||| || ||||| || || Sbjct 85283 TTCTAATCCAGTCACTTGAGCAACAAGACGCGTCAGCAGCGCGTAGCTGGCAATATTAAA 85342 Query 6664 CGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATT 6723 ||||| || | ||||||||| |||| ||||| || | ||| || |||||||| ||||| Sbjct 85343 TGGCACGCCAAGCCCCATGTCGGCCGAGCGTTGGTACATCTGACATGACAGCTCTCCATT 85402 Query 6724 CGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCAT 6768 || || || |||||||| | ||||||| || || | ||||| Sbjct 85403 TGCTACATAAAATTGGCAAAACATGTGGCAAGGTGGTAATGCCAT 85447 Score = 113 bits (124), Expect = 4e-20 Identities = 161/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCC 34636 ||||| | || || ||||||| | |||||||| || || || ||||| |||||||| Sbjct 85447 ATGGCATTACCACCTTGCCACATGTTTTGCCAATTTTATGTAGCAAATGGAGAGCTGTCA 85388 Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696 || ||| | || ||||| |||| ||||||||| | || ||||| || || ||||| || Sbjct 85387 TGTCAGATGTACCAACGCTCGGCCGACATGGGGCTTGGCGTGCCATTTAATATTGCCAGC 85328 Query 34697 TACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTG 34756 ||||| ||||| ||| | | ||||| || || || | ||||| || | | Sbjct 85327 TACGCGCTGCTGACGCGTCTTGTTGCTCAAGTGACTGGATTAGAACCTGGTGAATTTATC 85268 Query 34757 CATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGC 34799 || ||| | || |||||||||||||| || || ||| |||||| Sbjct 85267 CA--CGTCATTGGCGATGCGCATATCTATCTAAATCACGTCGAGC 85225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448244682428640