Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq112 116 3e-21 >seq112 Length=380982 Score = 116 bits (128), Expect = 3e-21 Identities = 276/412 (67%), Gaps = 4/412 (1%) Strand=Plus/Plus Query 118468 AGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCA 118527 |||||||| | |||||| | ||||| ||| ||||| ||||| || || ||||||||| Sbjct 85221 AGTGGCTCGACGTGATTTAGATAGATATGCGCATCGCCAATGACGTGGATAAATTCACCA 85280 Query 118528 GGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTA 118587 ||| | || |||| ||||||| | |||| || ||||||||| | |||| Sbjct 85281 GGTTCTAATCCAGTCACTTGAGCAACAAGACGCGTCAGCAGCGCGTAGCTGGCAATATTA 85340 Query 118588 AAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCG 118647 || || || || || |||||||| || || | ||||||| || || || ||||| || Sbjct 85341 AATGGCACGCCAAGCCCCATGTCGGCCGAGCGTTGGTACATCTGACATGACAGCTCTCCA 85400 Query 118648 TTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGTTGG 118707 ||||| |||||||| || | | ||||| || || || | |||| | || | Sbjct 85401 TTTGCTACATAAAATTGGCAAAACATGTGGCAAGGTGGTAATGCCATTTCGTTGAGGTCT 85460 Query 118708 GCAGGATTCCAGGCTGTTA-AAACATGCCTTCTGCTATATGGTTCTACCTGTATACCCTC 118766 ||||| ||||| || | | | |||| || | | ||| | ||| | Sbjct 85461 GCAGGGTTCCACGCCGACAGGATAATGCGACGGTCTGTTGGACTCTTAC-GTAGCTTTTG 85519 Query 118767 AATTAAATTCTGAATCTGATCCACACCCTTTCCAGTATACTGAGACTCGCATCCT-TTAT 118825 ||| | | | || |||||| ||||| | |||||||| | | | |||| | ||| Sbjct 85520 AATAACCTCTTCAAGCTGATCAACACCTTGACCAGTATAATCCG-CATGCATGTTCGTAT 85578 Query 118826 ATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGATCTCC 118877 ||| || |||||| | ||||||||| |||||||| || || |||||||| Sbjct 85579 ATTTAGCTCCAAAATGACGCCATTGAAAGCCATAAACCGGTCCAAGATCTCC 85630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414460827359368