Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq321 170 4e-37 seq252 136 9e-27 >seq321 Length=1809241 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||| ||||| || |||||||| || |||||||| |||||||| || | ||||||||| Sbjct 557146 ACAAGATGAAGCGTCGACTCTTTCTGAATGTTATAGTCCGCAAGAGTACGTCCATCTTCG 557205 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||||||||| || || || || || || |||||||| |||| |||||||||||||| Sbjct 557206 AGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTCCTGA 557265 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 || || || || || || || ||| |||| || || || || || ||||| ||||| Sbjct 557266 ATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCCAGCGTGATGGTCTTG 557325 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || ||||| || || | ||||||||| Sbjct 557326 CCTGTAAGGGTCTTGACGAAAATCTGCATTTT 557357 >seq252 Length=912309 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || || ||||| || || ||||||| | ||||| || ||||||||||| ||||| || Sbjct 785553 TTCTGAATGTTGTAGTCTGCAAGGGATCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATC 785612 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | ||| || |||||||| |||| |||||||| ||||| || ||||| || || || || Sbjct 785613 AAGCGCTGCTGGTCAGGTGGAATACCTTCCTTATCCTGAATTTTTTGCTTGACATTGTCA 785672 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 ||| ||||||| ||| || || | ||||| ||||| || || | |||||| ||||| Sbjct 785673 ATGCTGTCAGAAGGTTCCACATCCAACGTGATGGTCTTGCCGGTCAAAGTCTTCACAAAA 785732 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 785733 ATCTGCAT 785740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159105039130130