Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq321 140 8e-28 seq252 129 1e-24 seq25 127 5e-24 seq3144 113 1e-19 seq2253 111 4e-19 seq3158 104 6e-17 seq2100 102 2e-16 seq1884 102 2e-16 seq3160 89.7 1e-12 seq3101 89.7 1e-12 seq524 86.0 1e-11 >seq321 Length=1809241 Score = 140 bits (154), Expect = 8e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || ||||| || || || || ||||| || | || || || || | ||| Sbjct 557133 ACGCAGACGCAATACAAGATGAAGCGTCGACTCTTTCTGAATGTTATAGTCCGCAAGAGT 557192 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||| || || || || || ||||| || |||||||| Sbjct 557193 ACGTCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGTGGAATACC 557252 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || || || ||||| ||| || ||| |||| || | |||||||| | Sbjct 557253 TTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCCAG 557312 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||||||| || | || || | ||| | |||||||| Sbjct 557313 CGTGATGGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCATTTT 557357 >seq252 Length=912309 Score = 129 bits (142), Expect = 1e-24 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 ||||| || || | | || ||||| || |||||||| |||||||| || | || || Sbjct 785562 TTGTAGTCTGCAAGGGATCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAAGCGCTGC 785621 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654 ||||| || |||||||||||||| || || || |||||||| ||| || ||| |||| Sbjct 785622 TGGTCAGGTGGAATACCTTCCTTATCCTGAATTTTTTGCTTGACATTGTCAATGCTGTCA 785681 Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || | |||||| || |||||||| |||||||| |||||||| || Sbjct 785682 GAAGGTTCCACATCCAACGTGATGGTCTTGCCGGTCAAAGTCTT 785725 Score = 102 bits (112), Expect = 2e-16 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | Sbjct 883074 TAGGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 883133 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | ||||||||||||||||||| Sbjct 883134 GTAACATGATGTATAGGGTCTGACAC 883159 >seq25 Length=594 Score = 127 bits (140), Expect = 5e-24 Identities = 105/128 (82%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 7600 TTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATT 7659 ||||| |||||||||| | || |||||||| || ||||| || ||||||||||||||| Sbjct 592 TTTTTAGTTATGCCGGCGTTAATTGGCGGTTTTGGTAATTGGTTTGTTCCTTTAATGATT 533 Query 7660 GGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 ||||||||||||||||| ||||| | | || |||||||||||||| ||| |||| || Sbjct 532 GGTGCTCCTGATATGGCATTTCCTCGTATGAATAATATAAGTTTTTGGTTATTACCTCCA 473 Query 7720 TCCTTATT 7727 | ||||| Sbjct 472 GCATTATT 465 Score = 116 bits (128), Expect = 9e-21 Identities = 89/104 (86%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| |||||||||||||| || |||||||||||||| | | ||||||||| |||||||| Sbjct 68 TTCTGGATGACCAAAAAACCAAAATAAATGTTGATATAATACAGGATCGCCGCCGCCTGA 127 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||||||| |||| ||| || ||||||||||||||||| |||| Sbjct 128 TGGATCATAAAATGAAGTGTTTAAATTTCTATCAGTTAATAACA 171 Score = 113 bits (124), Expect = 1e-19 Identities = 136/184 (74%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||| | |||| | | |||||| ||| ||||||||||| | || || | ||||| Sbjct 246 AACGGTAGTCTATGAAAACTTAAACCTGGTGCTCTCATATTATAAATTGTCGATATAAAA 305 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || || || |||| | ||| || ||||||| | |||||||||||| ||||||||||| Sbjct 306 TTAATTGCACCTAATAAAGATGAAATACCTGTTAAATGTAAACTAAAAATTGCTAAATCT 365 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || || || || |||| | || ||| || ||||||||||| || ||| Sbjct 366 ACTGAAGGTCCTGAATGTGCTTGTACACTTGA---TAATGGGGGGTAAACTGTCCAACCG 422 Query 371542 GTTC 371545 |||| Sbjct 423 GTTC 426 >seq3144 Length=3372 Score = 113 bits (124), Expect = 1e-19 Identities = 89/104 (86%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAGGGCAG 6825 |||| |||||||||||||||||||||||||| | |||||||| | ||| | || ||||| Sbjct 2321 TTGAAAGAATGATCAGCCACATTGGGACTGAGATACGGCCCA-GACTTTTTTAAAGGCAG 2263 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||||| |||| || ||||||| |||||||||||||| || ||| Sbjct 2262 CAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAAT 2219 Score = 100 bits (110), Expect = 7e-16 Identities = 102/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 1655 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 1714 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| || |||||| | || | ||||| ||| | || Sbjct 1715 GACTCCCGTCAATTCCTTTGAATTTCAATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 1774 Query 7850 TACGCGTTAGCT 7861 ||||||||||| Sbjct 1775 AACGCGTTAGCT 1786 >seq2253 Length=601 Score = 111 bits (122), Expect = 4e-19 Identities = 108/138 (78%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || || || |||||| ||||| ||||| ||| ||||||||||||| |||||||||| Sbjct 265 ATGTCAAGAGTAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCT 324 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 | | | | |||||| || |||||||||||||||||||| |||| | | |||| || Sbjct 325 TGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGT 384 Query 7845 ATA-TTTACGCGTTAGCT 7861 | || ||||||||||| Sbjct 385 CGACTTAACGCGTTAGCT 402 >seq3158 Length=4427 Score = 104 bits (114), Expect = 6e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||| ||||| || || ||||| || || ||||| |||||||||||||| Sbjct 3822 GAAAATTTGTCCATCTGTAATTGAAATTACATTAGTTGGAATATATGCAGAAACATCACC 3763 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | || ||||| ||||||| ||| || ||||| | ||| |||| Sbjct 3762 AGCTTGAGTTTCAATAATCGGTAAAGCTGTTAATGAACCTCCACCTATTTTTCTATT 3706 Score = 89.7 bits (98), Expect = 1e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 5031 GCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAACATGCTTTA 5090 || || || |||||||||| | |||| |||||||||||||||||||||||||||||| | Sbjct 3505 GCACCTTATACAGGTTGTGCTTTAGGTGAATATTTTAGAGATAATGGTAAACATGCTGTT 3564 Query 5091 ATCATCTACGATGATTTAAGTAAACAA 5117 || | || ||||||||| |||||| Sbjct 3565 ATTTTTTATGATGATTTATCAAAACAA 3591 >seq2100 Length=826 Score = 102 bits (112), Expect = 2e-16 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | Sbjct 503 TAGGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 562 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | ||||||||||||||||||| Sbjct 563 GTAACATGATGTATAGGGTCTGACAC 588 >seq1884 Length=313614 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 7624 GGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCA 7683 || |||||||| ||||| || ||||||||||||||||||||||||||| |||| ||||| Sbjct 185636 GGTGGTTTCGGCAATTGGTTTGTTCCTTTAATGATTGGTGCTCCTGATTTGGCATTTCCT 185577 Query 7684 AGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 | | || |||||||||||||| ||| | || || | ||||| Sbjct 185576 CGTATGAATAATATAAGTTTTTGGTTATTGCCTCCAGCATTATT 185533 >seq3160 Length=929 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| ||| ||| ||| | ||| || | ||||||| || ||| | | Sbjct 766 AACTTTATATTTAATTTTTAGTGCTTTTGCCGGTGTTGTTGGTACTACTTTATCTCTTTT 825 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 ||||| |||||||||| || ||| |||||| || | || ||| ||| | || Sbjct 826 AATAAGAATAGAATTAGCACAACCCGGTAATCAAATTTTTATGGGAAATCATCAATTATA 885 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTT 7603 ||| ||| || |||| || ||||| ||||| ||| | || |||| Sbjct 886 CAATGTTGTTGTTACAGCACATGCTTTTGTAATGGTATTTTTTT 929 >seq3101 Length=2481951 Score = 89.7 bits (98), Expect = 1e-12 Identities = 104/139 (75%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 7568 TTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCG 7627 || |||| |||||||| ||| | | ||||||| |||||||| | | | || || | Sbjct 955118 TTGTTACAGCGCATGCGTTTACATTAGTATTCTTTTA-GTTATGCCCGCTTTAATTGGTG 955176 Query 7628 GTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGC 7687 | || | ||||| || || |||||||||||| |||||||||||||||| ||||| | Sbjct 955177 GCTTTGCTAATTGGTTTGTCCCTTTAATGATTAGTGCTCCTGATATGGCATTTCCTCGCA 955236 Query 7688 TTAACAATATAAGTTTTTG 7706 | || ||||| || ||||| Sbjct 955237 TGAAGAATATGAGGTTTTG 955255 >seq524 Length=1474960 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 1227546 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 1227487 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCG 7825 || |||||| || |||||| ||| || |||||| Sbjct 1227486 GACTCCCGTCAATTCCTTTGAATTTCAATCTTGCG 1227452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192482886834428