Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq112 134 1e-26 >seq112 Length=380982 Score = 134 bits (148), Expect = 1e-26 Identities = 380/584 (65%), Gaps = 0/584 (0%) Strand=Plus/Plus Query 27142 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 27201 || || || ||||||| || |||| || || || || | | ||||| ||| || || Sbjct 85221 AGTGGCTCGACGTGATTTAGATAGATATGCGCATCGCCAATGACGTGGATAAATTCACCA 85280 Query 27202 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 27261 ||||||| || || || ||||| | | ||| || || | ||||||||| || ||| Sbjct 85281 GGTTCTAATCCAGTCACTTGAGCAACAAGACGCGTCAGCAGCGCGTAGCTGGCAATATTA 85340 Query 27262 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCA 27321 || || || || ||||||||||| |||| | ||||| | |||||| || ||||||||| Sbjct 85341 AATGGCACGCCAAGCCCCATGTCGGCCGAGCGTTGGTACATCTGACATGACAGCTCTCCA 85400 Query 27322 TCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 | ||| ||||| || || | |||||| || || | ||||| | | |||| Sbjct 85401 TTTGCTACATAAAATTGGCAAAACATGTGGCAAGGTGGTAATGCCATTTCGTTGAGGTCT 85460 Query 27382 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 27441 |||||||| || ||| ||| ||||| | |||| ||| | || | | | Sbjct 85461 GCAGGGTTCCACGCCGACAGGATAATGCGACGGTCTGTTGGACTCTTACGTAGCTTTTGA 85520 Query 27442 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTAC 27501 | | | || |||||||| || || || | || || | ||||| ||| || Sbjct 85521 ATAACCTCTTCAAGCTGATCAACACCTTGACCAGTATAATCCGCATGCATGTTCGTATAT 85580 Query 27502 TCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 27561 | ||||| ||||| | |||||| || || || |||||||| || ||||| |||| | Sbjct 85581 TTAGCTCCAAAATGACGCCATTGAAAGCCATAAACCGGTCCAAGATCTCCTACTTCTCGA 85640 Query 27562 TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACC 27621 || || || | | || | | | || | || || ||| | ||||| || | | Sbjct 85641 GTCTGGAGACCTCGGCTATCTAGATACTCACGAGATCCATTGCCATCCCATATGTGAATA 85700 Query 27622 CCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCC 27681 |||| | ||| || | |||||| || || | ||||||| ||||||||| Sbjct 85701 TCCTTTTGCTGCAGCGTTTGAGCATTTGTGTCTCCACTAATAAACCACAATAGCTCCTCC 85760 Query 27682 ACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725 | || | ||| || ||||| ||||| || || | ||||| Sbjct 85761 GCTACACCTCGCCAGAATACCCTTTTGGTAGTCAGCAATGGAAA 85804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369492960347222