Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq653 307 1e-78 seq3042 212 9e-50 >seq653 Length=2021493 Score = 307 bits (340), Expect = 1e-78 Identities = 1322/2072 (64%), Gaps = 32/2072 (2%) Strand=Plus/Plus Query 76772 CTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACC 76831 |||||||| ||||| ||||| | || | ||| | ||| | |||||||| || Sbjct 711204 CTTATCCACAGTAAATTGAATCGCGTCAGCTTTAGGTCGTCCACGCATGTAGTACATGCC 711263 Query 76832 AGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAAC--TA 76889 || || || ||| |||| | ||||| |||||| || ||||| | ||| | Sbjct 711264 CGTCTTGAGTCCCTTTTTCCAAGCATAGAAGTGCATGGACGTAAGTTT--ACTAATGGTC 711321 Query 76890 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 76949 || || || || ||||| |||| |||||| || || || | || |||| ||| || Sbjct 711322 GGGTCAGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATATACGCGCCTCGATCGGCT 711381 Query 76950 GCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATA 77009 | ||| | || | || ||| || ||||||||| | ||| ||| | || || | Sbjct 711382 GACATGTCTAGCACGGCCTTCTGTTTAATTTCCCACACAGTCTTGTACTTTTCCTTCACC 711441 Query 77010 TCATCTGGAAGG--TTTG-TATTTTGAATGGAACCACCATCTGATATAATT-GTATTCT- 77064 | || |||| | |||| | ||||||| || |||| ||| | |||| | ||| Sbjct 711442 GCCTCGGGAATGGCTTTGATCTTTTGAACCGACCCACTATCGTTCAAAATTTGGTTTCGC 711501 Query 77065 --TTATATCATCATTCCACAATTTCCTC--TCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 || | | || || ||||| || ||| || | | |||| ||| Sbjct 711502 ACTTGTGGCGTC------CAGATTCCTAATTCAATTAGCTCTTTCATCAGATACTTATTG 711555 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || || |||||| || | ||| || | ||| |||| || ||| |||||||| || Sbjct 711556 ACAATCGTAAATTCGCCGGCCAACACGCGACGGTTGTACATGTTAGAAGTATATGGCTCG 711615 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | ||||||||||| |||||||| ||||| ||||| || ||||||||||| || |||| | Sbjct 711616 ATTGATTCATTGTTGCCCAAAATCTGAGCTGTAGATGCTGTTGGCATAGGGGCTACCAGT 711675 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 | ||| | | ||||||| | | || | || || | |||||||||||| Sbjct 711676 AGCGAATTCCGTAAACCATGTTGCATAACCTTTTTCTTGAGTGCATCCCAATCCCAAAGT 711735 Query 77301 TCTGAAGGTACA---ACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGAT 77357 | || | | | || |||| | || | || | ||| || || || || |||| Sbjct 711736 CCCGACGATGGAGTGACTCCCCACATGTCAAACTGAAAAATGCCTTTGCTTGCTGGTGAT 711795 Query 77358 CCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCT 77417 || | |||| || ||||| ||| | || || | ||| || ||||| | Sbjct 711796 CCTTGGAATGTCTCGTAAGGACCTAATTCTTTTGCAATTTCCATTGACGTTTCCATGGAA 711855 Query 77418 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAAC 77477 || ||||| || || ||||| || ||||| || || | || | ||| |||||| Sbjct 711856 GAATAGTAAATCGTCTCAAAAATATTTTTATTCAGCTCGCGCGCCGAAGGACTCTCAAAC 711915 Query 77478 GGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTA 77537 | |||| | |||||||| ||||| || | |||||| || ||||| || | |||| Sbjct 711916 GCGTAATTCATGAGAATAAACGCATCAGCCAGTCCCTGGACGCCAATGCCGACCGGTCGG 711975 Query 77538 TGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTA 77597 |||| | | ||||| ||| ||||||| | ||||||||||| | || || | || Sbjct 711976 TGTCGCATGTTGGACTTTTCAGCTTCTATGACGGGATAATAATTGACATCAATGACCTTG 712035 Query 77598 TTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCA 77657 || || || | |||| ||| |||||||| | | ||| | | ||||| | Sbjct 712036 TTAAGGTTGCGCGTCACTATTTTCACCACGTCGTACAATTTCTGGTAGTCAAAAACACGG 712095 Query 77658 TCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCG 77717 || | ||||| | ||| || | |||||| | ||| |||||||| || |||| | Sbjct 712096 TCATTCACAAATTTAGGCAAGGCCACAGATGCCAAATTGCAAACTGCGACTTCATCCGGA 712155 Query 77718 TTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGT 77777 | ||||| || | ||| |||| ||| || | || ||||| |||||||| Sbjct 712156 GAAGTATATTCCATCACTTCGCAGCATAAATTGCTCGAACGAATTGTGCCAAGATTTTGC 712215 Query 77778 TGGTTGCTCTTTTTATT-GCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAAT 77836 ||||| |||| ||| ||| | ||| || || || ||| | ||| || |||||||| Sbjct 712216 TGGTTCGACTTTCGATTCGCA-GCGTCTTTGTAGAGCATATAAGGAACACCAGTTTCAAT 712274 Query 77837 CTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATCATAGATTTGTATCGCC 77895 ||| | || | ||||| ||| | | || ||| || ||| | ||| | | | Sbjct 712275 CTGAGCGTCCAGAATAGCAAACCATA-GCTGCTGAGCATTAATCGTT--TTTCGAGCACG 712331 Query 77896 TCTCTCTT--TCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAA 77953 || || | || || | |||||||| || |||||||| ||||| || | | Sbjct 712332 TCCATCCTGTTCGTACTTAGTATATAATGCATCGAATTCATCACCCCAGCATTCGTAAAG 712391 Query 77954 TCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCAT 78013 |||||| ||| || || || | | ||| | |||| | | || || ||||| Sbjct 712392 TCCAGGCGCTTCGTTCGGACAGAAGAGACTCCACTTGCCATTCGCTTCGACGCGCTTCAT 712451 Query 78014 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073 ||||||||| ||||||||||| ||| || | ||| |||| | |||| ||||| || Sbjct 712452 AAAGAGATCCGGTATCCATAGTGCATAGAACAAATCACGGGCACGATGTAGCTCATTGCC 712511 Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133 ||||||| | ||| ||||| || | || ||| | |||||| ||||||| ||| || Sbjct 712512 GTGATTCTTTCGCAAATCCAGAAATTCAAAAACATCGGCATGCCACGGTTCTAAATAGAT 712571 Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193 || | ||| || ||| ||| || ||||| | ||||| || || | |||| | Sbjct 712572 AGCAAACGATCCTTTGCGCTTACCACCACCTTGATCCACATATCGAGCAGTATCATTAAA 712631 Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCC 78253 ||| | |||||||||||| || || || |||| || || || || ||| ||||| Sbjct 712632 AACGCGCAACATTGGAATGATTCCATTCGATGAGCCGTTGGTGCCCCGAATGTAACTGTT 712691 Query 78254 ACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313 | || || || || || | || || || || ||| || || || || Sbjct 712692 TGTCGCACGGATGTTGTGCATACTAACTCCAATCCCACCAGCCCATTTCGAAATACACGC 712751 Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373 || |||| | |||||| || ||||| ||||| |||||| ||| | |||||| Sbjct 712752 ACATTGTTTAAGTGTATCATATATACCTTCTATTGAATCATCCTGCATTGCCAAAAGAAA 712811 Query 78374 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGT 78433 || || | ||| || | || |||||||| || | ||| || | || || || Sbjct 712812 GCATGACGATAATTGTGGACGCGGTGTACCTGCATTGAAGAGTGTTGGTGTCGCGTGGGT 712871 Query 78434 AAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATG 78493 ||| | |||| || | | | |||||| || | || | || ||||| | || Sbjct 712872 AAAAAACTTTTGTGACATGAACTCGTATGTCTCGAGTGCAGCTTTAATGTCATTCTTGTG 712931 Query 78494 AATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTAT 78553 |||||||| ||| ||||| | | ||| || ||||||| || || || ||||| Sbjct 712932 AATTCCTAACGCCACACGAAGGATCATCTGTTGAGGTCGCTCGACAACTTTTCCATTTAC 712991 Query 78554 TTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 78613 || | || | || | || ||||| |||||||||| || |||||| | Sbjct 712992 ACGAAAGAGATACCCTCGCTCGAGTGTCTTAAAGCCAAAATAGTCATACTCAAAGTCACG 713051 Query 78614 CTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATGACAGT 78673 ||||| ||||| | ||||| |||| |||||||| | | ||||| | | | | || Sbjct 713052 GTCGTAGATAATTGCTGAATTGAGTTCATCTTTGTGCTGCATTACAATCT-CGTAAACGT 713110 Query 78674 AGT-TGAAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAAATCTT 78732 || | ||||| || | | | | || | || | |||| ||| || ||| Sbjct 713111 CGTCAGCAATAAGTGGCGCTGCTGCTCCTGTCTTTTCGTGTACATTCTTATGGAAGACTT 713170 Query 78733 CCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTG 78792 | || ||||||||| | || ||||| | || || |||||||| || || || | || Sbjct 713171 CAATGTTATCACTAAAAACCTTGTTTGTGTTTTTATGAAGATTAGACACGGCAATACGTG 713230 Query 78793 CAGCTAGAATAGCATAATCAGGATGTTGTGTA 78824 | || || | | | | || || ||||| ||| Sbjct 713231 CTGCAAGCTTGGAAAAGTCCGGGTGTTGGGTA 713262 >seq3042 Length=3267112 Score = 212 bits (234), Expect = 9e-50 Identities = 419/610 (69%), Gaps = 15/610 (2%) Strand=Plus/Minus Query 48133 ACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAA 48192 |||| | || ||||| || || | ||||||||| | |||||| | || || |||| Sbjct 2154114 ACATGAGGCAAGCAAAGTCCGTGTGCATACCTTCATCCCGACTAATGAGCTCATTTGAAA 2154055 Query 48193 ATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG 48252 | | ||||| ||||| || ||||| || || |||||||| |||| ||| || || | Sbjct 2154054 AGCTAAGACCAGGCATCAGACCACGCTTCTTAAGCCAAAAGATTGAGCAGAATGAGCCTG 2153995 Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTG--GCTTC 48310 | || || || || ||||| || ||||| || ||| ||||||| | || | | | Sbjct 2153994 AGAAAAAAATACCCTCTACTGCAGCAAAAGC--TAACAGCCTCTCCGGATATGAAGATAC 2153937 Query 48311 GTTGTGTATC-CACCGTT---GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTT 48366 | ||| ||| |||| | | ||||||| ||| || || | || ||||| || |||| Sbjct 2153936 -TCGTGGATCGCACCACTTAAGCGCCCAATGAGCTTTTTTTGTGACGCAAGGGATGGTTT 2153878 Query 48367 CTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAA 48426 | || ||| || ||| || || ||| | || || | || ||||| || | || Sbjct 2153877 CAATTGCACGCAATAGATGGTCCTTCTCAATCGCGTCCTTGATATACGTATCGATAAGAA 2153818 Query 48427 GACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCG 48486 | ||||| || ||||||||||| ||||| || || ||||| ||||| ||||| | | Sbjct 2153817 GCGAATACACCTCCGAGTGAATATTCTCAATAGCGATTTGAAAGCCGTAGAAACAGCGAG 2153758 Query 48487 CTTCTGTGATCTGTACCTCCGTAC--AAAATCGTTCAGCCAAATTCTCATTTACTATTCC 48544 | |||| | ||| || || | | ||| || | ||||| ||| ||||| || ||||| Sbjct 2153757 CCTCTGGCACCTGCACTTCATTGCTGAAATTCAT--AGCCAGATTTTCATTGACAATTCC 2153700 Query 48545 ATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAG 48604 ||||||||| || ||||| || | ||||| ||||||||||| |||||| || || Sbjct 2153699 ATCACTAGCTGCGAAAAAAGCAAGCACATGCTTAATAAAATAGCGCTCGTTGTTTGTAAG 2153640 Query 48605 TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGC 48664 | |||||| || | || | | || ||| | ||| ||||||||||| || || || Sbjct 2153639 GCTTGCCCAGTCCTTAAGGTCGTGTACTAGATCGAGTTCCTCAGCTGTCCAGAACGAGGC 2153580 Query 48665 CTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAA-ATAACAAATC 48723 || || || || ||||| | ||| | ||| ||| || ||||||| | || || | Sbjct 2153579 TTCCGCCTTCTTGTACATCTGCCACACATC-GTGTTCCTGAATGGGAAAGAGCACGAAGC 2153521 Query 48724 TATTTGGATT 48733 ||| ||||| Sbjct 2153520 GATTAGGATT 2153511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694641343215680