Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq653 298 8e-76 seq3042 201 2e-46 >seq653 Length=2021493 Score = 298 bits (330), Expect = 8e-76 Identities = 1290/2020 (64%), Gaps = 26/2020 (1%) Strand=Plus/Plus Query 75416 TAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTG 75475 |||||||| || || || || ||| |||| | ||||| |||||| || ||||| Sbjct 711253 TAGTACATGCCCGTCTTGAGTCCCTTTTTCCAAGCATAGAAGTGCATGGACGTAAGTTT- 711311 Query 75476 GAATAAC--TCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTC 75533 | ||| |||| || || || ||||| |||| |||||| || || || | || | Sbjct 711312 -ACTAATGGTCGGGTCAGCAATGTGAATGTTCAGCGACTGGCTCTGGCAAATATACGCGC 711370 Query 75534 CTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAA 75593 ||| ||| || | ||| | || | || ||| || ||||||||| | ||| ||| | Sbjct 711371 CTCGATCGGCTGACATGTCTAGCACGGCCTTCTGTTTAATTTCCCACACAGTCTTGTACT 711430 Query 75594 CTTGTTTGATATCATCTGGAA--GATTTG-TATTTTGAATGGATCCGCCATCAGATATAA 75650 || || | | || |||| | |||| | ||||||| || || | ||| | || Sbjct 711431 TTTCCTTCACCGCCTCGGGAATGGCTTTGATCTTTTGAACCGACCCACTATCGTTCAAAA 711490 Query 75651 TTGTATTCTTGATCTCATCAT-TCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGA 75709 || || | | || | |||| | | | || ||| || | | |||| Sbjct 711491 TTTGGTT-TCGCACTTGTGGCGTCCAGATTCCTAATTCAATTAGCTCTTTCATCAGATAC 711549 Query 75710 GGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATAT 75769 ||| ||||| |||||| || | ||| || | || |||| || ||| |||||| Sbjct 711550 TTATTGACAATCGTAAATTCGCCGGCCAACACGCGACGGTTGTACATGTTAGAAGTATAT 711609 Query 75770 GGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCC 75829 || || | ||||||||||| |||||||| ||||| || || || || |||||||| || Sbjct 711610 GGCTCGATTGATTCATTGTTGCCCAAAATCTGAGCTGTAGATGCTGTTGGCATAGGGGCT 711669 Query 75830 ACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCC 75889 |||| || ||| | | ||||||| | | || | || || | ||||||| Sbjct 711670 ACCAGTAGCGAATTCCGTAAACCATGTTGCATAACCTTTTTCTTGAGTGCATCCCAATCC 711729 Query 75890 CAAAGATCTGATGGTACA---ACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCA 75946 ||||| | || | | | || |||| | || | || | ||| || ||||| || Sbjct 711730 CAAAGTCCCGACGATGGAGTGACTCCCCACATGTCAAACTGAAAAATGCCTTTGCTTGCT 711789 Query 75947 TATGATCCATTATATGTTTCGTAAGTCCCG--TCCTTTTCAGCTAGTTCGCAACTCGCCT 76004 |||||| | |||| ||||||| || | ||||| || | ||| || | Sbjct 711790 GGTGATCCTTGGAATGTCTCGTAAGGACCTAATTCTTTT--GCAATTTCCATTGACGTTT 711847 Query 76005 CTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGAC 76064 | | | | || ||||| || || ||||| || ||||| || || |||| | ||| Sbjct 711848 CCATGGAAGAATAGTAAATCGTCTCAAAAATATTTTTATTCAGCTCGCGCGCCGAAGGAC 711907 Query 76065 TATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAA 76124 | ||||| | |||| | |||||||| ||||| || |||||||| || ||||| || | Sbjct 711908 TCTCAAACGCGTAATTCATGAGAATAAACGCATCAGCCAGTCCCTGGACGCCAATGCCGA 711967 Query 76125 TAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTA 76184 |||| |||| | | ||||| ||||||||||| | || |||||||| | ||| | Sbjct 711968 CCGGTCGGTGTCGCATGTTGGACTTTTCAGCTTCTATGACGGGATAATAATTGACATCAA 712027 Query 76185 TAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAA 76244 | | || || || || | |||| ||| |||||||| | | ||| | | |||| Sbjct 712028 TGACCTTGTTAAGGTTGCGCGTCACTATTTTCACCACGTCGTACAATTTCTGGTAGTCAA 712087 Query 76245 ATTTTCCATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCT 76304 | | || ||||||| || | || | |||||| | ||| ||||| || || | Sbjct 712088 AAACACGGTCATTCACAAATTTAGGCAAGGCCACAGATGCCAAATTGCAAACTGCGACTT 712147 Query 76305 CATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAA 76364 ||| | | | ||||| || | || ||||| ||| || | || || |||| Sbjct 712148 CATCCGGAGAAGTATATTCCATCACTTCGCAGCATAAATTGCTCGAACGAATTGTGCCAA 712207 Query 76365 GATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAG 76424 ||||||| ||||| |||| || | ||| || || || | | | ||| |||| Sbjct 712208 GATTTTGCTGGTTCGACTTTCGATTCGCAGCGTCTTTGTAGAGCATATAAGGAACACCAG 712267 Query 76425 TTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATTATAGATTTG 76483 |||||||||| | || | ||||| ||| | | || ||| || || | ||| Sbjct 712268 TTTCAATCTGAGCGTCCAGAATAGCAAACCATA-GCTGCTGAGCATTAATCGTT--TTTC 712324 Query 76484 TATCGCTTCTCTCTT--TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACAT 76541 | | | || || | || || | |||||||| || |||||||| ||||| | Sbjct 712325 GAGCACGTCCATCCTGTTCGTACTTAGTATATAATGCATCGAATTCATCACCCCAGCATT 712384 Query 76542 CATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCC 76601 | | | ||||| ||| |||||||| | | ||||| |||| | | || | Sbjct 712385 CGTAAAGTCCAGGCGCTTCGTTCGGACAGAAGAGACTCCACTTGCCATTCGCTTCGACGC 712444 Query 76602 GTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTT 76661 | |||||||||||||| ||||||||||| ||| || | ||| |||| | | || | Sbjct 712445 GCTTCATAAAGAGATCCGGTATCCATAGTGCATAGAACAAATCACGGGCACGATGTAGCT 712504 Query 76662 CATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTA 76721 |||| || ||||||| | ||| || || || | || ||| | |||||| ||||||| Sbjct 712505 CATTGCCGTGATTCTTTCGCAAATCCAGAAATTCAAAAACATCGGCATGCCACGGTTCTA 712564 Query 76722 GATATATCGCCATAACACCCGGT-CGTTTATTACCTCCCTGATCTATATATCTGGCAGTG 76780 ||| || | || | | || | || ||| ||| || ||||| | ||||| ||||| Sbjct 712565 AATAGATAG-CAAACGATCCTTTGCGCTTACCACCACCTTGATCCACATATCGAGCAGTA 712623 Query 76781 TTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATA 76840 | |||| |||| | |||||||||||| || || || |||| || || || || ||| Sbjct 712624 TCATTAAAAACGCGCAACATTGGAATGATTCCATTCGATGAGCCGTTGGTGCCCCGAATG 712683 Query 76841 TAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAG 76900 ||||| ||||| || || ||| | || || || || ||| ||| || Sbjct 712684 TAACTGTTTGTCGCACGGATGTTGTGCATACTAACTCCAATCCCACCAGCCCATTTCGAA 712743 Query 76901 ATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTA 76960 || ||||| |||| | ||| ||||| || || ||||| ||||||| ||| Sbjct 712744 ATACACGCACATTGTTTAAGTGTATCATATATACCTTCTATTGAATCATCCTGCATTGCC 712803 Query 76961 AGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGAT 77020 | |||||| || || | ||| || | || |||||||| || | ||| || | Sbjct 712804 AAAAGAAAGCATGACGATAATTGTGGACGCGGTGTACCTGCATTGAAGAGTGTTGGTGTC 712863 Query 77021 GCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCC 77080 || || || || | |||| || | | | |||||| || | | |||| || || Sbjct 712864 GCGTGGGTAAAAAACTTTTGTGACATGAACTCGTATGTCTCGAGTGCAGCTTTAATGTCA 712923 Query 77081 CATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTA 77140 | |||||||||| || ||||| | | ||| || |||||||| || ||| || Sbjct 712924 TTCTTGTGAATTCCTAACGCCACACGAAGGATCATCTGTTGAGGTCGCTCGACAACTTTT 712983 Query 77141 TTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 77200 ||||| || | || | || | || ||||| |||||||||| || | Sbjct 712984 CCATTTACACGAAAGAGATACCCTCGCTCGAGTGTCTTAAAGCCAAAATAGTCATACTCA 713043 Query 77201 AAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCC 77260 ||||| | ||||| ||||| | ||||| |||| || || | | | ||||| | | Sbjct 713044 AAGTCACGGTCGTAGATAATTGCTGAATTGAGTTCATCTTTGTGCTGCATTACAATCT-C 713102 Query 77261 ATGACAGTGGT-AGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAA 77319 | | || || || ||||| ||| | | | ||| | || | |||| ||| Sbjct 713103 GTAAACGTCGTCAGCAATAAGTGGCGCTGCTGCTCCTGTCTTTTCGTGTACATTCTTATG 713162 Query 77320 TAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGC 77379 ||| |||| || || ||||| | || ||||| | || || ||||| || ||||| Sbjct 713163 GAAGACTTCAATGTTATCACTAAAAACCTTGTTTGTGTTTTTATGAAGATTAGACACGGC 713222 Query 77380 TATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTA 77419 || | || || || | | | |||| || ||||| ||| Sbjct 713223 AATACGTGCTGCAAGCTTGGAAAAGTCCGGGTGTTGGGTA 713262 >seq3042 Length=3267112 Score = 201 bits (222), Expect = 2e-46 Identities = 397/580 (68%), Gaps = 13/580 (2%) Strand=Plus/Minus Query 46651 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTT 46710 |||||||| | |||||| | || || ||||| | || |||||||| || |||||||| Sbjct 2154085 CCTTCATCCCGACTAATGAGCTCATTTGAAAAGCTAAGACCAGGCATCAGACCACGCTTC 2154026 Query 46711 TTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAAT 46770 || |||||||| || | ||| || || || || || || || ||||| || || || Sbjct 2154025 TTAAGCCAAAAGATTGAGCAGAATGAGCCTGAGAAAAAAATACCCTCTACTGCAGCAAAA 2153966 Query 46771 GCGACAAGTCTCTCTCCGTAACTGGC-ATCATTATGAATC----CACCTTTGAGCCCAAT 46825 || | || ||||| || | || || | || ||| ||| | | ||||||| Sbjct 2153965 GCTAACAGCCTCTC--CGGATATGAAGATACTCGTGGATCGCACCACTTAAGCGCCCAAT 2153908 Query 46826 CAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCA- 46884 ||| ||||| | || ||||| || ||||| || ||| || ||| || || ||| Sbjct 2153907 GAGCTTTTTTTGTGACGCAAGGGATGGTTTCAATTGCACGCAATAGATGGTCCTTCTCAA 2153848 Query 46885 TCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCA 46944 || | || || | ||| ||||| || | ||| ||||| || || ||||| || ||| Sbjct 2153847 TCGCG-TCCTTGATATACGTATCGATAAGAAGCGAATACACCTCCGAGTGAATATTCTCA 2153789 Query 46945 ATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTAC--AAA 47002 ||||| || ||||| ||||| ||||| | || || | | ||| || || | | ||| Sbjct 2153788 ATAGCGATTTGAAAGCCGTAGAAACAGCGAGCCTCTGGCACCTGCACTTCATTGCTGAAA 2153729 Query 47003 ATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACAT 47062 || | || || ||| ||||| || |||||||||||||| || ||||| || | |||| Sbjct 2153728 TTCAT--AGCCAGATTTTCATTGACAATTCCATCACTAGCTGCGAAAAAAGCAAGCACAT 2153671 Query 47063 GTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATA 47122 | ||||||||||| || | | | || || | |||||| || | || | | || Sbjct 2153670 GCTTAATAAAATAGCGCTCGTTGTTTGTAAGGCTTGCCCAGTCCTTAAGGTCGTGTACTA 2153611 Query 47123 TATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATAT 47182 ||| | ||| |||||||||||||| || || || || || || ||||| | ||| | || Sbjct 2153610 GATCGAGTTCCTCAGCTGTCCAGAACGAGGCTTCCGCCTTCTTGTACATCTGCCACACAT 2153551 Query 47183 CACGATATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222 | | | || || ||||| | || || | ||| ||||| Sbjct 2153550 CGTGTTCCTGAATGGGAAAGAGCACGAAGCGATTAGGATT 2153511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712906221267840