Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq321 152 1e-31 seq252 127 4e-24 seq1336 91.5 3e-13 >seq321 Length=1809241 Score = 152 bits (168), Expect = 1e-31 Identities = 175/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || | ||| ||||| | ||| ||||| || ||||| ||||| || Sbjct 557127 ACCACCACGCAGACGCAATACAAGATGAAGCGTCGACTCTTTCTGAATGTTATAGTCCGC 557186 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| || || || || || ||||| |||| ||| || |||||| || Sbjct 557187 AAGAGTACGTCCATCTTCGAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGTGG 557246 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||||| |||||||| || || || ||| || || | || || ||||||| | || | Sbjct 557247 AATACCTTCCTTGTCCTGAATTTTCTGC-TTGACATTGTCAATGCTGTCCGACGGCTCCA 557305 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 | || || ||||| ||||| || || | ||||| ||||| |||||||||||| Sbjct 557306 CGTCCAGCGTGATGGTCTTGCCTGTAAGGGTCTTGACGAAAATCTGCATTTTC 557358 >seq252 Length=912309 Score = 127 bits (140), Expect = 4e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || || ||||||||||| ||||| | ||||||||||| || || || || || || ||| Sbjct 785553 TTCTGAATGTTGTAGTCTGCAAGGGATCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATC 785612 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || |||||| |||||||| ||||| || || || ||| || || | || Sbjct 785613 AAGCGCTGCTGGTCAGGTGGAATACCTTCCTTATCCTGAATTTTTTGCTTGACATTGTCA 785672 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 || |||| |||| ||| || || | ||||| ||||| || ||||||||||| || || Sbjct 785673 ATGCTGTCAGAAGGTTCCACATCCAACGTGATGGTCTTGCCGGTCAAAGTCTTCACAAAA 785732 Query 283092 ATCTGCAT 283099 |||||||| Sbjct 785733 ATCTGCAT 785740 >seq1336 Length=1546205 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||||||||| || ||||||| || ||||||||||| | ||| ||||| Sbjct 26292 TCCTTGTCTTCACCAGACTGGAAACGCCACTGAATGTACTGATTCGCGGTCTCATCAAGG 26233 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||||||||||||||||||||| || ||||| || |||| ||||| ||||| Sbjct 26232 TGCGACTCGATGTGGTGGAAAGCGTGTTGAGCCACATAGGCAAACCGCATCGAAGGATGT 26173 Query 316282 TTCCAAAC 316289 ||||| || Sbjct 26172 TTCCACAC 26165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046696793323948