Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20halstedii_20[genbank_20GCA_5F900000015.1_202015-11-18] 3,162 sequences; 75,321,785 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq321 163 7e-35 >seq321 Length=1809241 Score = 163 bits (180), Expect = 7e-35 Identities = 168/219 (77%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||| || || || ||||| || || ||||| || || ||||| Sbjct 557357 AAAATGC---AGATTTTCGTCAAGACCCTTACAGGCAAGACCATCACGCTGGACGTGGAG 557301 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || |||| ||| || || ||||| || || ||||||||||| ||||| || || || Sbjct 557300 CCGTCGGACAGCATTGACAATGTCAAGCAGAAAATTCAGGACAAGGAAGGTATTCCACCT 557241 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| || || || || || || || ||||||||||||||| | |||||||| || Sbjct 557240 GACCAGCAGCGTCTGATTTTTGCTGGCAAGCAGCTCGAAGATGGACGTACTCTTGCGGAC 557181 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||||| | || ||||| || || || |||||||| ||| Sbjct 557180 TATAACATTCAGAAAGAGTCGACGCTTCATCTTGTATTG 557142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203682433087428