Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2 113 1e-19 seq182 109 1e-18 seq163 105 1e-17 seq206 86.0 1e-11 >seq2 Length=690202 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 86062 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 86121 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 86122 CCCACGGTGGGC 86133 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||| |||||||||||||||||| ||||| ||||||| |||||||||||||||| | Sbjct 85761 GCCCGTCACGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGATC 85820 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 85821 CCCACGGTGGGC 85832 >seq182 Length=140942 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||||||||||||||| || ||||||| || ||||||||||| | ||| ||| || Sbjct 107377 CTCTTTGTCTTCACCAGACTGGAAACGCCACTGAATATACTGGTTCGCAGTCTCGTCGAG 107318 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||| |||||||| ||||||||||| ||||| ||||||| ||||| || || Sbjct 107317 GTGCGACTCAATGTGGTGAAAAGCATGCTGAGCCACATAAGCAAAGCGCATGGAAGGGTG 107258 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 ||||| || ||| |||| | || | || ||||| |||| ||||| || || Sbjct 107257 TTTCCACACCTGACCACTGGTCGGCTCTACTTCACCCGTCAGCATTTTAATCAGCGTCGA 107198 Query 319170 TTTCCCCGCACCGTT 319184 || || |||||||| Sbjct 107197 CTTACCAGCACCGTT 107183 >seq163 Length=154122 Score = 105 bits (116), Expect = 1e-17 Identities = 66/71 (93%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| Sbjct 62792 CCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCCTAATCTTGTGGTCGTGGGTTCGAGCC 62733 Query 165771 CCACGATGGGC 165781 ||||| ||||| Sbjct 62732 CCACGGTGGGC 62722 >seq206 Length=132917 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 ||||||||||||||| |||||||||| | ||||||| | ||||||||||||||||||| Sbjct 27351 CCCGTCTAGCTCAGTTGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 27410 Query 165771 CCACG 165775 ||||| Sbjct 27411 CCACG 27415 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 ||||||||||||||| |||||||||| | ||||||| | ||||||||||||||||||| Sbjct 27909 CCCGTCTAGCTCAGTTGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 27968 Query 165771 CCACG 165775 ||||| Sbjct 27969 CCACG 27973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057798479004290