Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1 116 4e-21 >seq1 Length=763219 Score = 116 bits (128), Expect = 4e-21 Identities = 287/430 (67%), Gaps = 4/430 (1%) Strand=Plus/Plus Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 |||||||| | ||| ||||| ||||| ||||| | | || ||||| || || ||| Sbjct 607201 CCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAGACCAGGCATTAAACCGCGCTTC 607260 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | |||||| || | | ||| || ||||| || || || || || || | ||||| Sbjct 607261 TTGAGCCAAAAGATGGAGCAGAATGAGCCAGAGAAAAAAATGCCTTCAACTGCAGCAAAG 607320 Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTT-TGTTACGAATCCATTTCTGCACCCACTC 17163 || | | ||||| | || | | | | || || | ||| ||| | |||| | Sbjct 607321 GCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTGGATCGCA-CCACTTCAGAGCCCAGTG 607379 Query 17164 GGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTG 17223 ||||||| | | |||| || || || || || | || | || || || Sbjct 607380 CGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCACGTAGTAGATGGTCCTTCTCAAT 607439 Query 17224 TAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCAT 17283 ||| | |||||||| || || | || ||||| ||| |||||||| ||||| || Sbjct 607440 CGCGTCTTTAATATACGTGTCAATCAAAAGCGAGTACACTTCCGAGTGTATATTCTCGAT 607499 Query 17284 GGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACG-TAGAATC 17342 || || ||||| ||||||||||| || || || | | || ||||| | || ||| Sbjct 607500 TGCGATTTGAAACCCGTAAAAGCAGCGAGCCTCTGGCACCTGCACTTCGTTGCTAAAATT 607559 Query 17343 GTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCT 17402 | ||||||||||| ||||| |||||||| || || || || || || | | ||||| Sbjct 607560 CAT-GGCTAGATTTTCATTCACAATGCCGTCACTAGCAGCAAAGAAAGCGAGCACATGCT 607618 Query 17403 TAATGAAATA 17412 |||||||||| Sbjct 607619 TAATGAAATA 607628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517533418270440