Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1 122 9e-23 >seq1 Length=763219 Score = 122 bits (134), Expect = 9e-23 Identities = 383/584 (66%), Gaps = 12/584 (2%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || ||||| ||||| || | || ||||| | ||| ||||| ||||| ||||| || Sbjct 607177 AGGCACGCAAAGTCCGTGTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTT 607236 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 | || |||||| || || ||||| | ||| || || | |||| ||||| || || || Sbjct 607237 AGACCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGATGG-AGCAGAATGAGCCAGAGAA 607295 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC-ATCTTTAT 16376 || || || ||||| | ||||| || | | ||||| | || | || | | | Sbjct 607296 AAAAATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTGG 607355 Query 16377 TACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGG 16436 || | ||| ||| | |||| | ||||||| | | ||| || || || || | Sbjct 607356 ATCGCA-CCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAG 607414 Query 16437 CCTTAAACAATTTCTCTTTTTCCTGAATATCGATT---ATATACGTATCAATCAGTAAAC 16493 | | | | || || || ||| || | |||||||| ||||||| | Sbjct 607415 CACGTAGTAGATGGTCCTTCTC---AATCGCGTCTTTAATATACGTGTCAATCAAAAGCG 607471 Query 16494 TGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCT 16553 ||||| ||| |||||||| ||||| || || || ||||| || || ||||| ||||||| Sbjct 607472 AGTACACTTCCGAGTGTATATTCTCGATTGCGATTTGAAACCCGTAAAAGCAGCGAGCCT 607531 Query 16554 CCGCTATTTGTACTTCCACG-TAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCA 16612 | | | || ||||| | |||||| | || || || |||||||| || |||||| Sbjct 607532 CTGGCACCTGCACTTCGTTGCTAAAATTCATG-GCTAGATTTTCATTCACAATGCCGTCA 607590 Query 16613 CTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATA 16672 || |||||||| || || | | |||||||||||||| |||| || || || Sbjct 607591 CTAGCAGCAAAGAAAGCGAGCACATGCTTAATGAAATAACGCTCGTTGTCCGTGAGGCTA 607650 Query 16673 TGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACT 16732 ||||||||| | ||| | | ||| | ||| || | |||||||| ||| | Sbjct 607651 GCCCAATCTTTCAGATCGTGCACCAGATCGAGTTCCTCAGCTGTCCAAAAAGAAGCTTCA 607710 Query 16733 GCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 || || || ||||| | ||| | || | | || |||||||| Sbjct 607711 GCTTTCTTGTACATCTGCCACACTTCGTGCTCCTGAATGGGAAA 607754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511402362583560