Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 239 5e-58 seq4 102 1e-16 >seq1 Length=763219 Score = 239 bits (264), Expect = 5e-58 Identities = 408/584 (70%), Gaps = 7/584 (1%) Strand=Plus/Plus Query 24149 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 24208 ||| | ||||||||| | ||||| | ||||| ||||| | || || ||||||| || Sbjct 607194 GTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAGACCAGGCATTAAACC 607253 Query 24209 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTG 24267 ||||| || |||||||| ||||| ||| ||||| ||||| || ||||| ||||| |||| Sbjct 607254 GCGCTTCTTGAGCCAAAAGATGGA-GCAGAATGAGCCAGAGAAAAAAATGCCTTCAACTG 607312 Query 24268 CCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG--CTGTC-ATGTATCCACTTTTGAG 24324 | |||||||| | ||| | |||| ||| | | | || || |||||| ||| Sbjct 607313 CAGCAAAGGCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTGGATCGCACCACTTCAGAG 607372 Query 24325 CCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttt 24384 |||| | || || || | || ||||| || ||||| |||||| | |||| || | Sbjct 607373 CCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCACGTAGTAGATGGTCCT 607432 Query 24385 tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 24444 | ||| | ||||||| ||| || ||||||||||| |||| |||||| || || | Sbjct 607433 TCTCAATCGCGTCTTTAATATACGTGTCAATCAAAAGCGAGTACACTTCCGAGTGTATAT 607492 Query 24445 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATAC 24504 | || || || |||||||| ||||| || || | |||||| | | ||| ||||| | | Sbjct 607493 TCTCGATTGCGATTTGAAACCCGTAAAAGCAGCGAGCCTCTGGCACCTGCACTTCGTTGC 607552 Query 24505 -AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 24563 ||||| | |||| |||||||||||| || |||||||| || ||||| || || | Sbjct 607553 TAAAATTCAT-GGCTAGATTTTCATTCACAATGCCGTCACTAGCAGCAAAGAAAGCGAGC 607611 Query 24564 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 24623 ||||| || || ||||| |||| || || || |||||| || | ||| | Sbjct 607612 ACATGCTTAATGAAATAACGCTCGTTGTCCGTGAGGCTAGCCCAATCTTTCAGATCGTGC 607671 Query 24624 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 24683 | ||| | ||| || |||||||||| || || || || || || ||||| | ||| Sbjct 607672 ACCAGATCGAGTTCCTCAGCTGTCCAAAAAGAAGCTTCAGCTTTCTTGTACATCTGCCAC 607731 Query 24684 ATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 24727 | || || | ||||| ||||| | ||||| | ||| | ||| Sbjct 607732 ACTTCGTGCTCCTGAATGGGAAAGAGCACAAAGCGATTGGAATT 607775 >seq4 Length=584709 Score = 102 bits (112), Expect = 1e-16 Identities = 772/1237 (62%), Gaps = 14/1237 (1%) Strand=Plus/Minus Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504 ||||||| || ||||| ||||| || ||| | || |||| |||| ||||||| Sbjct 120314 CGTAATAGATCGTTTCAAAGATTTTTCGATTCAAGTCGCGTGCGGATTGGCTCTCAAATG 120255 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 | |||| | ||||||||| || || || ||||| || || ||||| |||| || | | Sbjct 120254 CAAAATTCATGAGAATAAAAGCATCAGCCAATCCCTGCACGCCAATGCCGACCGGGCGGT 120195 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 | | | |||| || ||| |||||||| | ||||| || || | || || | || | Sbjct 120194 GGCGCATATTGGACGTTTGGGCTTCTGGCACTGGATAGTAGTTGACGTCAATGACCTTGT 120135 Query 53625 TGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCAT 53684 | | ||| | | ||||||||||| || | ||||| | | ||||| || | Sbjct 120134 TTAAGTTGCGCGTCACCACTTTGACCACGTCGTAGAGTTTCCGGTAGTCAAAGACCCCGT 120075 Query 53685 CTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 53744 || |||||| || ||| || | || |||| || || ||||| || || | | | Sbjct 120074 CTTGCACAAACTTGGGCAAGGCCACCGACGCCAAGTTGCACACGGCCACTTCGTCCGAAG 120015 Query 53745 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 53804 || ||||| || | ||| ||| | |||||| | ||| || || | ||||| | Sbjct 120014 ACGTATATTCCATCACTTCACAGCACAAATTACTCGATCGGATCGTGCCAAGGTTTTGCT 119955 Query 53805 GATTACTCTTTTTGTTACAC-GCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATC 53863 | || | ||| | | | | || || ||||| || ||| | || || || |||||| Sbjct 119954 GGTT-CGATTTGCGGTTCGCGGCGTCTTTATAGAGCATGTAAGGGACGCCCGTCTCAATC 119896 Query 53864 TGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTAT--TATAGATTTGTATCTCT 53921 || | || | ||||| ||| | | || || || | | | | | | Sbjct 119895 TGAGCGTCGAGGATCGCAAACCATAGTTGCTGCGCATTGATCGTCTTG-CGGGCACGGCC 119837 Query 53922 TTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATC 53981 || || |||||| | ||||| |||||| |||| |||||| | || || | Sbjct 119836 TTCCT-GTTCGTACTGGACGTACAAGGCCTCAAACGCGTCACCCCAACGTTCGTACAGAC 119778 Query 53982 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 54041 | || ||| | ||||| | | |||| || | | | ||| || ||||||| Sbjct 119777 CCGGCGCTTCGTTGGGACAAAAGAGACTCCACGTGCCATTGGCTTCCACGCGCTTCATAA 119718 Query 54042 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 54101 ||||||| || | ||| | || | ||| | ||| | | | ||| |||||| || Sbjct 119717 AGAGATCCGGGACCCACAAGGCAAAAAACAAATCCCGAGCACGATGCAACTCGTTGCCGT 119658 Query 54102 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161 || || | || || ||| | | | ||| | ||||| || || | || |||| Sbjct 119657 GGTTTTTCCGCAACTCTAGAAACTCAAACACATCGGCGTGCCAGGGCTCTAGATAGATGG 119598 Query 54162 TCATAAC--TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 54219 || ||| || || || || || ||||| | ||| | || |||| ||| | Sbjct 119597 -CA-AACGAGCCTTTGCGCTTCCCACCACCTTGATCAACGTACCGCGCCGTGTCATTGAA 119540 Query 54220 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 54279 || | |||||||||||| || ||||| || | || || || || ||| ||||| Sbjct 119539 GACGCGCAACATTGGAATGATGCCATTCGACGACCCGTTCGTGCCTCGGATGTAGCTGTT 119480 Query 54280 ACTGGCACGAATAT--TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAAT 54337 |||||||||| | | | | |||| || ||||| || ||| ||| || || | Sbjct 119479 GGTGGCACGAATGTTGTGCATACTGAT--CCCGATCCCGCCGGCCCATTTCGAAATGCAC 119422 Query 54338 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 54397 || ||| | || | ||| ||||| ||||| || || ||||| |||| | ||| Sbjct 119421 GCACATTGCTTGAGCGTGTCATAAATGCCTTCAATCGAGTCATCTTGCATGGCCAAGAGA 119362 Query 54398 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 54457 || || || | || ||||| ||| || || ||||| | || || | ||||| Sbjct 119361 AAGCACGACGAGAGCTGTGGACGAGGAGTGCCTGCGTTAAAGAGCGTCGGTGTCGCGTGG 119302 Query 54458 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGA 54517 ||||| |||| | || | || | |||||||| | || | | || || | Sbjct 119301 GTAAAGAATTTCTGCGACATGAGCTCATACGTCTCAAGCGCGGCCTTGATGTCGTGCTTG 119242 Query 54518 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 54577 || || || | ||| ||||| | | ||| || || || | || |||| ||| || Sbjct 119241 TGGATGCCCAATGCCACACGGAGAAGCATCTGTTGCGGACGCTCGACGACTTTGCCATTG 119182 Query 54578 ATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 54637 | | | ||| | || | |||||||| ||||| |||| |||| |||||| Sbjct 119181 ACACGAAAGAGGTACCCTCGCTCGAGCGTTTTAAACCCAAAGTAGTCGTATTCAAAGTCC 119122 Query 54638 CGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTAT 54674 || ||||| || || | || || || | || |||| Sbjct 119121 CGGTCGTATATGATGGCGGAATTCAGCTCGTCTTTAT 119085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593707625277840