Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq55 104 2e-17 seq593 102 7e-17 seq43 98.7 8e-16 seq157 86.0 5e-12 >seq55 Length=263441 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | | ||| | |||| || || || || ||||| || ||||||||| Sbjct 150815 CCGCCACGCAGACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCCGCC 150874 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || | || || ||||| ||||| ||| | || || | ||||||||| || Sbjct 150875 AAAGTCCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGA 150934 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| || || ||||| || | | | | |||| ||||||| Sbjct 150935 ATCCCTTCCTTGTCCTGAATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCACG 150994 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 |||| |||||||||||||| || | || ||||| || || |||||||| Sbjct 150995 TCCAGCGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCATTTT 151044 >seq593 Length=12966 Score = 102 bits (112), Expect = 7e-17 Identities = 139/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 ||||||||||||| |||||||| || | || | || || || || ||||| ||| | | Sbjct 9108 CCTTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 9167 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | | | ||||||||| || | |||||||||||| ||| || || || || | | Sbjct 9168 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGT 9227 Query 21106 CGA--CAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGAC 21163 | | | || | || || ||| |||| |||||||||||||| || ||||||||||| Sbjct 9228 CAATGCTGTCTGAC--GGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTTTTGAC 9285 Query 21164 AAATATTTGCAT 21175 ||| || ||||| Sbjct 9286 AAAAATCTGCAT 9297 >seq43 Length=290853 Score = 98.7 bits (108), Expect = 8e-16 Identities = 138/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 ||||||||||||| |||||||| || | || | || || || || ||||| ||| | | Sbjct 97873 CCTTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 97932 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | | | ||||||||| || | |||||||||||| ||| || || || || | | Sbjct 97933 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGT 97992 Query 21106 CGA--CAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGAC 21163 | | | || | || || ||| |||| |||||||||||||| || ||||| ||||| Sbjct 97993 CAATGCTGTCTGAC--GGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGAC 98050 Query 21164 AAATATTTGCAT 21175 ||| || ||||| Sbjct 98051 AAAAATCTGCAT 98062 >seq157 Length=157498 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || ||||| || || ||||| ||||| ||| || || ||||||||| ||| ||||| Sbjct 62798 GTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTCCAACTGCTTGCCA 62857 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||| || | |||||||| ||| | ||||||||||| ||||| || ||| Sbjct 62858 GCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTC 62917 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| | ||| ||||| || | || || ||||| || || || || Sbjct 62918 ACGTTATCGATCGAGTCAGAAGGCTCAACGTCAAGAGTGATTGTCTTTCCCGTCAAAGTC 62977 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 62978 TTGACGAAAATCTGCAT 62994 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 ||||| || ||||| | | ||| | || | || ||||| || || ||||| ||||| Sbjct 62081 TTTCCACCACGCAGGCGCAACACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCG 62140 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 || || | |||| |||| ||| ||||| ||| |||| || | |||||||| | Sbjct 62141 CTCAAAGTACGTCCGTCTTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGG 62200 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | ||||||||||| ||||| || ||||| | | ||| | || ||||| Sbjct 62201 GGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCT 62260 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || || ||||| || || ||||| ||||| || || ||||| Sbjct 62261 ACATCGAGAGTTATAGTCTTCCCCGTCAACGTCTTGACGAAGATCTGCAT 62310 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || ||||| || |||||||||||||| || || | ||||||||| ||| ||||| Sbjct 63026 GTCGACTCTTTCTGAATGTTATAGTCGCTCAACGTACGACCGTCCTCCAACTGCTTGCCG 63085 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || | |||||||| ||| | ||||||||||| ||||| || ||| Sbjct 63086 GCAAAGATTAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTC 63145 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| | || ||||| || | || || ||||| || || | ||| Sbjct 63146 ACGTTGTCGATCGAGTCGGAAGGCTCAACATCAAGAGTGATTGTCTTTCCCGTCAGCGTC 63205 Query 21159 TTGACAAATATTTGCATT 21176 || ||||| || |||||| Sbjct 63206 TTTACAAAAATCTGCATT 63223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422249509547228