Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 170 2e-37 seq157 118 1e-21 seq593 82.4 8e-11 >seq1 Length=763219 Score = 170 bits (188), Expect = 2e-37 Identities = 395/593 (67%), Gaps = 12/593 (2%) Strand=Plus/Minus Query 116603 CGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAG 116662 || || ||| | || ||||| || | | || |||||| |||||||| || || || Sbjct 607766 CGCTTTGTGCTCTTTCCCATTCAGGAGCACGAAGTGTGGCAGATGTACAAGAAAGCTGAA 607707 Query 116663 GCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGC 116722 || || || ||||| | ||||| | || ||| | || || || |||| || Sbjct 607706 GCTTCTTTTTGGACAGCTGAGGAACTCGATCTGGTGCACGATCTGAAAGATTGGGCTAGC 607647 Query 116723 TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGAC 116782 | | ||||||||||| ||||||| ||||| ||||| || || || || || || ||| Sbjct 607646 CTCACGGACAACGAGCGTTATTTCATTAAGCATGTGCTCGCTTTCTTTGCTGCTAGTGAC 607587 Query 116783 GGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCG 116842 ||||| || || || ||||| | | | ||| | || ||||||||| | ||||| Sbjct 607586 GGCATTGTGAATGAAAATCTAGCCATGAATTTTAGCAACGAAGTGCAGGTGCCAGAGGCT 607527 Query 116843 CGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC 116902 || ||||| ||||| ||||| ||||| || ||||| | ||||||||| |||| ||| Sbjct 607526 CGCTGCTTTTACGGGTTTCAAATCGCAATCGAGAATATACACTCGGAAGTGTACTCGCTT 607467 Query 116903 CTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAG 116962 | || |||||||| | || |||||| || | | | || |||||| Sbjct 607466 TTGATTGACACGTATATTAAAGACGCGATTGAGAAGGACCATCTACTACGTGCTATCGAG 607407 Query 116963 ACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTG----GATCGCCGGCAG 117018 || || || ||||||| | || || | ||||| ||| || |||| ||| Sbjct 607406 ACTATCCCTTGCGTCACCAAAAAAGCGCACTGGGCTCTGAAGTGGTGCGATCCACGG--- 607350 Query 117019 AGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTC 117078 | | ||| || || || ||||||| || || || || ||| | || || || Sbjct 607349 -GTCTCTTCCTATCCAGAACGGCTTTTGGCCTTTGCTGCAGTTGAAGGCATTTTTTTCTC 607291 Query 117079 GGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCT--GACT 117136 ||| ||| | |||| |||||||||||||| ||||| | ||||| || || | | Sbjct 607290 TGGCTCATTCTGCTCCATCTTTTGGCTCAAGAAGCGCGGTTTAATGCCTGGTCTAAGCTT 607231 Query 117137 TTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 |||| |||||||| || | ||||||||||| |||| |||||||| || Sbjct 607230 TTCA--AACGAGCTTATTAGCCGGGACGAGGGTATGCACACGGACTTTGCGTG 607180 >seq157 Length=157498 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || || ||||| | ||||| || | | Sbjct 62994 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTCT 62935 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| ||||| || || || ||| | ||||| Sbjct 62934 GACTCGATCGATAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGACCA 62876 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||| | || ||||| ||| |||| |||| || || || | ||||||||| Sbjct 62875 GCAACGTCTCATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTGAGCGACTACAA 62816 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| | || || || || ||||||||| || | || ||| Sbjct 62815 CATCCAGAAAGAGTCGACCCTTCACCTTGTGTTGCGCCTGCGTGGAGGC 62767 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | ||||| || || || || |||| || || | || Sbjct 62310 ATGCAGATCTTCGTCAAGACGTTGACGGGGAAGACTATAACTCTCGATGTAGAGCCTTCC 62251 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| ||||| || || || ||| | ||||| Sbjct 62250 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGACCA 62192 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||| | || ||||| ||| |||| |||| || || | | ||||||||| Sbjct 62191 GCAACGTCTCATTTTTGCTGGCAAGCAGTTGGAAGACGGACGTACTTTGAGCGACTACAA 62132 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| | || || || || ||||||||| || | || || Sbjct 62131 CATCCAGAAAGAGTCGACCCTTCACCTTGTGTTGCGCCTGCGTGGTGG 62084 Score = 113 bits (124), Expect = 5e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || || || || ||||||| || | | Sbjct 62538 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACTATAACTCTCGACGTAGAGCCTTCT 62479 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| ||||| || || || || | ||||| Sbjct 62478 GACTCGATCGATAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCA 62420 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| || ||||| ||| |||| |||| || || || | ||||||||| Sbjct 62419 GCAACGTCTAATCTTTGCTGGCAAGCAGTTGGAGGACGGACGTACTCTGAGCGACTACAA 62360 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | || || || || |||||||| Sbjct 62359 CATCCAGAAGGAGTCGACCCTCCACCTTGTGTTGCG 62324 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || ||||| ||||| ||||| || || ||||| | || || || | | Sbjct 63223 AATGCAGATTTTTGTAAAGACGCTGACGGGAAAGACAATCACTCTTGATGTTGAGCCTTC 63164 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | |||| | ||| | || |||| ||||| || || || ||| | |||| Sbjct 63163 CGACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGACC 63105 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| || |||| || ||||| ||| |||| |||| || || | | |||||| | Sbjct 63104 AGCAACGTCTAATCTTTGCCGGCAAGCAGTTGGAGGACGGTCGTACGTTGAGCGACTATA 63045 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||| ||||| ||| | || || || || |||||||| || | ||||| Sbjct 63044 ACATTCAGAAAGAGTCGACCCTCCACCTTGTGTTGCGTCTGCGTGGCGG 62996 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || || || || |||| || || | || Sbjct 62766 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACTATAACTCTCGATGTGGAGCCTTCC 62707 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| ||||| || || || ||| | || || Sbjct 62706 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGATCA 62648 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| || ||||| ||| |||| |||| || || | | |||||||| Sbjct 62647 GCAACGTCTAATCTTTGCTGGCAAGCAGTTGGAGGACGGACGTACTTTGAGTGACTACAA 62588 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | || || || || |||||||| Sbjct 62587 CATCCAGAAGGAGTCGACCCTTCACCTTGTGTTGCG 62552 >seq593 Length=12966 Score = 82.4 bits (90), Expect = 8e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || |||||| | |||||||| ||||| || | ||||| ||| | | Sbjct 9297 ATGCAGATTTTTGTCAAAACGTTGACGGGCAAGACCATTACGCTGGACGTGGAACCGTCA 9238 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | | ||| | ||||| | ||||| || ||||| || | |||||| Sbjct 9237 GACAGCATTGACAATGTAAAGCAGAAAATCCAGGACAAGGAAGGCATTCCGCCTGACCAG 9178 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || ||||| || || || || | || | || ||||||||| Sbjct 9177 CAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTTCACTTGCGGACTACAAC 9118 Query 40870 ATCCAGAAGG 40879 || || |||| Sbjct 9117 ATTCAAAAGG 9108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515207073028080