Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq55 123 2e-23 seq157 116 3e-21 seq4 113 4e-20 seq1 93.3 4e-14 seq593 87.8 2e-12 seq43 84.2 2e-11 >seq55 Length=263441 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||| | ||| | || || ||||| ||||| ||||| || || ||| || ||| Sbjct 150829 CAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCCGCCAAAGTCCGGCCATC 150888 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 |||||||| || ||||| |||| ||||||||||| ||||| || || || |||||||| Sbjct 150889 TTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTTGTC 150948 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 |||||| ||||| || | || | | | |||| | ||| || || | || | || Sbjct 150949 CTGAATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCACGTCCAGCGTAATGGT 151008 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || || ||||||||||| Sbjct 151009 CTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 151041 >seq157 Length=157498 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | | |||||| | ||||| || ||||| || || |||||||| |||| Sbjct 62310 TACCTCCACGCAGACGCAACACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGC 62369 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| ||| || ||||| | ||| || ||||| |||| ||||| ||||| || || | Sbjct 62370 TCAGAGTACGTCCGTCCTCCAACTGCTTGCCAGCAAAGATTAGACGTTGCTGGTCAGGTG 62429 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || |||||||| ||| || || || || | |||| | ||| | ||| | Sbjct 62430 GAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCTA 62489 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||| || | || || || |||| ||| || || ||||||||||| Sbjct 62490 CGTCGAGAGTTATAGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62538 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | | |||||| | ||| | || ||||| || || |||||||| || | Sbjct 62538 TACCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAC 62597 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| ||| || ||||| | ||| || ||||| |||| ||||| |||||||| || | Sbjct 62598 TCAAAGTACGTCCGTCCTCCAACTGCTTGCCAGCAAAGATTAGACGTTGCTGATCAGGGG 62657 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || |||||||| ||| || || || || | |||| | ||| | ||| | Sbjct 62658 GAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCCA 62717 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 | |||| || | || || || |||| ||| || || |||||||||||| || Sbjct 62718 CATCGAGAGTTATAGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATGCCT 62770 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | |||||| | ||||| || |||||||| |||||||| || |||| Sbjct 62994 TACCGCCACGCAGACGCAACACAAGGTGGAGGGTCGACTCTTTCTGAATGTTATAGTCGC 63053 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| || || ||||| | ||| || || || |||| ||||| ||||| || || | Sbjct 63054 TCAACGTACGACCGTCCTCCAACTGCTTGCCGGCAAAGATTAGACGTTGCTGGTCAGGGG 63113 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || |||||||| ||| || || || || | |||| | ||| | ||| | Sbjct 63114 GAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAA 63173 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | || || || ||||| || ||||||||||||||||| Sbjct 63174 CATCAAGAGTGATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCAT 63222 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | |||||| | ||| | || |||||||| || |||||||| |||||| Sbjct 62768 CCTCCACGCAGGCGCAACACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTC 62827 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||||| | ||| || ||||| | |||||||| ||||| || || || Sbjct 62828 AGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGA 62887 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || |||||||| ||| || || || || | |||| | ||| | ||| || Sbjct 62888 ATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCAACG 62947 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || || || |||| ||| || || ||||||||||| Sbjct 62948 TCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62994 >seq4 Length=584709 Score = 113 bits (124), Expect = 4e-20 Identities = 294/442 (67%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 132918 CGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGAC 132977 |||| || ||||||||||| || || ||| | ||||||||||||||| ||| ||| Sbjct 120924 CGCATGTAGTACATGCCCGTCTTGAGCCCTTTTTTCCACGCGTAAAAGTGCATG---GAC 120868 Query 132978 ACCACCGAG-TAA--GTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATG 133034 | | ||| || || || || | | |||| ||||||||||||| || Sbjct 120867 GTGAGTTTGCTAATCGTCGGGTCCGCAATGTGAATGTTCAACGATTGACTCTGACAAATA 120808 Query 133035 AAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGTC 133094 || | |||| || |||| || | | | |||| ||||||||||| | ||| Sbjct 120807 AACGCGCCACGATCCGCGGACAGATCGAGCACGGCCTTTTGCTTGATCTCCCACACTGTC 120748 Query 133095 TTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCG 133154 ||| | | || || | ||| | | ||| || || ||||||||||| ||| Sbjct 120747 TTGTACTTTTCTTTCACGGCATCTGGCAGTGCGTGGATCTTTTGCACGGACCCACCGTCG 120688 Query 133155 GCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACG 133214 || ||||| || |||| || || || | ||| | | || || ||| |||| | Sbjct 120687 TTCAGAATCTGATTCCGCACTTGGGGCGTCCAGATGCCCAATTCAATCAGCTCTTTCATC 120628 Query 133215 AGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACAT--TCG 133272 ||||||| ||| || | ||||||||| || | ||||| | || | ||||| | | Sbjct 120627 AGATACTTGTTTACGATCGTAAACTCGCCAGCCAAGACGCGGC-GAT-TGTACATGTTGG 120570 Query 133273 ACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCA 133332 |||| || || || | |||||||||||||| | || || || |||| ||||||||||| Sbjct 120569 ACGTAAAGGGCTCAATCGATTCGTTGTTGCCCAAGATTTGAGCGGTCGACGCCGTGGGCA 120510 Query 133333 TGTACGCCACCAACAAAGAGTT 133354 || ||| ||||| | ||||| Sbjct 120509 TGGGCGCGACCAAGAGCGAGTT 120488 >seq1 Length=763219 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 45157 GTACATTGAGTTTGTCGCCGATCGTCTTCTCGTCCAGTTAA-AGTATCCCAAGATGTACT 45215 ||||||||| ||||| || |||||||| || | | | ||||||| ||||| ||| Sbjct 607035 GTACATTGAATTTGTGGCTGATCGTCTGCTTTACTCGCTGGGAGTATCC-AAGATCTACC 606977 Query 45216 ATACTGAGAACCCATTCGAGTTTATGAACAATATTTCGTTGGAGGGCAAAACTAAttttt 45275 || | ||||||||||||| | ||| ||| || || | ||||||| || || |||| Sbjct 606976 ATGCAAAGAACCCATTCGATTGGATGGACATGATCTCTCTCCAGGGCAAGACGAACTTTT 606917 Query 45276 ttGAGAAACGCGTCGGCGAATAC 45298 ||||||||||||| || |||||| Sbjct 606916 TTGAGAAACGCGTTGGAGAATAC 606894 >seq593 Length=12966 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||||||||||||| || | || |||| || ||| || || || || ||||| ||| Sbjct 9110 TTTTGAATGTTGTAGTC-CGCA-AGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 9167 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 | | ||||||||| || || || ||||| |||||||| ||||| || || || | | Sbjct 9168 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGT 9227 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 | | | |||| | || || || | || | || ||||| |||| ||||| |||| Sbjct 9228 CAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTTTTGACAA 9287 Query 118729 AAATCTGCATG 118739 ||||||||||| Sbjct 9288 AAATCTGCATG 9298 >seq43 Length=290853 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||||||||||||| || | || |||| || ||| || || || || ||||| ||| Sbjct 97875 TTTTGAATGTTGTAGTC-CGCA-AGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 97932 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 | | ||||||||| || || || ||||| |||||||| ||||| || || || | | Sbjct 97933 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGT 97992 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 | | | |||| | || || || | || | || ||||| |||| || || |||| Sbjct 97993 CAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACAA 98052 Query 118729 AAATCTGCATGGCT 118742 ||||||||||| || Sbjct 98053 AAATCTGCATGACT 98066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433820443999036