Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 >seq1 Length=763219 Score = 96.9 bits (106), Expect = 3e-15 Identities = 351/542 (65%), Gaps = 12/542 (2%) Strand=Plus/Plus Query 16250 TGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCT 16309 |||| || ||||||| || || | |||||||||||| | ||||| ||||||| || Sbjct 607195 TGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAGACCAGGCATTAAACCG 607254 Query 16310 CGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCG 16369 || || || | |||||| || | | ||||| ||||| || || || ||||||||||| Sbjct 607255 CGCTTCTTGAGCCAAAAGATGGAGCAGAATGAGCCAGAGAAAAAAATGCCTTCAACTGCA 607314 Query 16370 GCAAATGCAACCAATCGCTC---ACCGTACGTTCTAtttttactttctatccatttttta 16426 ||||| || | | || || | | | | | | || ||| || | Sbjct 607315 GCAAAGGCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTGGA---TCGCACCACTTCAGA 607371 Query 16427 gcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAttt 16486 ||||| | ||||||| | || || || |||| || ||| | || || | Sbjct 607372 GCCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCACGTAGTAGATGGTCC 607431 Query 16487 ttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTA-TACATTTCTGAATGAAT 16545 || || | ||| |||||| || || || | || | | |||| ||| || || || Sbjct 607432 TTCTCAATCGCGTCTTTAATATACGTGTCAATCA-AAAGCGAGTACACTTCCGAGTGTAT 607490 Query 16546 ATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGA 16605 |||||| ||||| || ||||| || |||||||| | ||| || | | || ||||| Sbjct 607491 ATTCTCGATTGCGATTTGAAACCCGTAAAAGCAGCGAGCCTCTGGCACCTGCACTTCGTT 607550 Query 16606 G-TAAAACCTTTCT-GCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCA 16663 | ||||| || | |||| ||||| || || || || || ||||| ||||| || || Sbjct 607551 GCTAAAA--TTCATGGCTAGATTTTCATTCACAATGCCGTCACTAGCAGCAAAGAAAGCG 607608 Query 16664 AGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCT 16723 || | || ||||| |||| ||||| || | || | ||| || | ||| Sbjct 607609 AGCACATGCTTAATGAAATAACGCTCGTTGTCCGTGAGGCTAGCCCAATCTTTCAGATCG 607668 Query 16724 TTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTC 16783 | | ||||| || || | |||||||||||||| |||| || || ||||| | | Sbjct 607669 TGCACCAGATCGAGTTCCTCAGCTGTCCAAAAAGAAGCTTCAGCTTTCTTGTACATCTGC 607728 Query 16784 CA 16785 || Sbjct 607729 CA 607730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462501113623800