Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq4 114 3e-20 seq1 89.7 1e-12 >seq4 Length=584709 Score = 114 bits (126), Expect = 3e-20 Identities = 431/667 (65%), Gaps = 27/667 (4%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || ||||| | ||||| || |||||||| ||| | ||| ||| | | Sbjct 119123 GACTTTGAATACGACTACTTTGGGTTTAAAACGCTCGAGCGAGGGTACCTCTTTCGTGTC 119182 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 ||||||| |||| || || || || ||| | | || ||||| | || || ||| Sbjct 119183 AATGGCAAAGTCGTCGAGCGTCCGCAACAGATGCTTCTCCGTGTGGCATTGGGCATCCAC 119242 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAA---CGCTGGA-- 248983 ||| | ||||| || || ||| |||||||| |||| | ||| | | Sbjct 119243 AAGCACGACATCAAGGCCGCGCTTGAGACGTA--------TGAGCTCATGTCGCAGAAAT 119294 Query 248984 ---TGACACATGCCACACCGACGCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGC 249039 | || || || |||||||||||||| ||||| || || | || | | ||||| Sbjct 119295 TCTTTACCCACGCGACACCGACGCTCTTTAACGCAGGCACTCCTCGTCCA-CAGCTCTCG 119353 Query 249040 TCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAA 249099 ||||||||||| | ||||||||||| ||||| | || ||||||||||||||||| || Sbjct 119354 TCGTGCTTTCTCTTGGCCATGCAAGATGACTCGATTGAAGGCATTTATGACACGCTCAAG 119413 Query 249100 CAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGA 249159 || ||| ||||| |||| || ||||| ||||| || | |||||| || Sbjct 119414 CAATGTGCGTGCATTTCGAAATGGGCCGGCGGGATCGGGATCAGTATGCACAACATTCGT 119473 Query 249160 GCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTG-ATGGTATCGTACCCCTCCT 249218 || | |||||| ||| || || ||||| | |||| ||| | || | | Sbjct 119474 GCCACCAACAGCTACATCCGAGGCACGAA-CGGGTCGTCGAATGGCATCATTCCAATGTT 119532 Query 249219 TCGATGCTTTGAGTCCAC----CGCCAGGTTCATCAACCAGGCCGGGCGCCGAAAGGGGT 249274 || ||| | ||| || | ||| ||||| || ||| || || || | Sbjct 119533 GCGCGTCTTCAATGACACGGCGCGGTACGTTGATCAAGGTGG-TGGGAAGCGCAAAGGCT 119591 Query 249275 CGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAA 249334 |||| ||||| ||| | || |||||||||||| | || ||||| || || ||| | Sbjct 119592 CGTTTGCCATCTATCTAGAGCCCTGGCACGCCGATGTGTTTGAGTTTCTAGAGTTGCGGA 119651 Query 249335 AGAACAACGGCAACGAGCT-CATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCC 249393 | ||| ||||||||||| | ||| | || || || | || | | | |||||||| | Sbjct 119652 AAAACCACGGCAACGAGTTGCAT-CGTGCTCGGGATTTGTTTTTTGCCTTGTGGGTCCCG 119710 Query 249394 GACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGAC 249453 || | || ||| ||||| | ||| | ||| |||| || ||| ||| ||| Sbjct 119711 GATCTCTTTATGAAGCGCGTGGAAGCCAATGGCACGTGGAGTCTCTTTTGTCCCAACGAA 119770 Query 249454 GCCCCGG 249460 || |||| Sbjct 119771 GCGCCGG 119777 >seq1 Length=763219 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 157274 TTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATCCACTCGAATGGGTT 157332 |||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct 606910 TTCTCAAAAAAGTTCGTCTTGCCCTGGAGAGAGATCATGTCCATCCAATCGAATGGGTT 606968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073740494378944