Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq55 102 6e-17 seq43 102 6e-17 seq593 96.9 3e-15 >seq55 Length=263441 Score = 102 bits (112), Expect = 6e-17 Identities = 155/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTT-GGCGATCG 45181 || || | ||||||||| || |||||||| |||||||| || || ||| ||| Sbjct 150830 AACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCCGCCAAAGTCCGGCCATCT 150889 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 ||| || || || || || || |||| ||||| |||||||| || | || |||||| Sbjct 150890 TCG---AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTTG 150946 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| |||||| || || || | | ||| ||| |||||| |||| ||||| Sbjct 150947 TCCTGAATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCACGTCCAGCGTAATG 151006 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 |||||||||||||| ||||| || || || ||||| || Sbjct 151007 GTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCATTTT 151044 >seq43 Length=290853 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 |||| |||||||||||||| ||| || | || || ||||| || || || || | Sbjct 97873 CCTTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 97932 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 |||| ||||| ||||| || || | || ||||||||| ||||| ||||| || Sbjct 97933 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGT 97992 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | |||||| ||||| |||| ||||| ||||||||||||| ||||| |||| Sbjct 97993 CAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACAA 98052 Query 45327 AGATTTGCATG 45337 | || |||||| Sbjct 98053 AAATCTGCATG 98063 >seq593 Length=12966 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 |||| |||||||||||||| ||| || | || || ||||| || || || || | Sbjct 9108 CCTTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 9167 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 |||| ||||| ||||| || || | || ||||||||| ||||| ||||| || Sbjct 9168 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGT 9227 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | |||||| ||||| |||| ||||| ||||||||||||| || || |||| Sbjct 9228 CAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTTTTGACAA 9287 Query 45327 AGATTTGCATG 45337 | || |||||| Sbjct 9288 AAATCTGCATG 9298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395066133394543