Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq154 152 1e-31 >seq154 Length=161528 Score = 152 bits (168), Expect = 1e-31 Identities = 419/633 (66%), Gaps = 12/633 (2%) Strand=Plus/Plus Query 35159 ACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGAC 35218 || || || || || |||| | |||||| | ||||||||||| | | |||| || Sbjct 91686 ACAGGCACGGGCACATTATCGGTATTTGGAGCTCAAATGAGGTTTAGTTTAAGAGAAAAC 91745 Query 35219 ACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCG 35278 ||||| | || || ||||| ||| | |||||| | || || | ||||| | | Sbjct 91746 GTCTTTCCATTGCTGACGACCAAAAAAGTATTCTGGCGGGGTGTAGCAGAAGAGTTACTG 91805 Query 35279 TGGTTCATCAGGGGCAATACAGACGC-CAAAGAATTG-GCCAAGAAGAAGATACACATCT 35336 |||||||| || || ||||| || |||| | | ||| || | || ||||| | Sbjct 91806 TGGTTCATAAGCGGAGATACAAGTGCTCAAACGCTACAGGCAA--AGGATATTCACATAT 91863 Query 35337 GGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGG 35396 || | | |||||| || || || | | |||| ||| |||| || | | | || | Sbjct 91864 GGGATGGTAATGGATCACGTGAGTATCTGGATAGTCGAGGCCTACAAAGCCGCGAAGTTG 91923 Query 35397 GAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATAT--GATAC 35454 | || | ||||| |||||||| || ||||||||||| ||||| || | ||| || || Sbjct 91924 GGGACCTTGGACCGGTATACGGCTTTCAATGGCGTCACTTTGGAGCCAAGTATACGA-AC 91982 Query 35455 CTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCT 35514 || | | || || ||||| | || ||||||| | || | || | | | || Sbjct 91983 ATGCA-TGCTGACTACACTGGCCAAGGCGTTGATCAGCTTGCAGAGGTAATCGAAAAGCT 92041 Query 35515 GAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCA 35574 | || |||||| || || |||| || || ||||||||||||| ||| | | Sbjct 92042 GCGAACGAATCCAACGGACCGACGGATTGTTTTGTCGGCATGGAATCCAGCCGATTTAAA 92101 Query 35575 CCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATT 35634 | ||||| |||||||| ||||||||| | ||||| |||||||| |||||||| || Sbjct 92102 CGAAATGGCACTTCCTCCTTGCCACATGTTTTGCCAATTCTATGTGGCAAATGGAGAGTT 92161 Query 35635 GTCGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATT 35692 |||||| || |||| ||||| || || ||| || | || ||||| || ||||| Sbjct 92162 GTCGTGTCAAATGTACCAGCGCTCGGCCGACATG--GGACTTGGTGTGCCGTTTAATATC 92219 Query 35693 GCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAG 35752 || ||| | || ||||| | ||| | || || || || || || || || Sbjct 92220 GCTAGCTACGCACTGCTGACACGTCTTGTTGCTCAAGTGACTGGGCTCAAGCCTGGCGAA 92279 Query 35753 TTTATCCTCACTCTTGGTGACGCACACATTTAT 35785 ||||||| | |||| || |||||| | ||| Sbjct 92280 TTTATCCACGTCATTGGCGATGCACACGTGTAT 92312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989560125358265