Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 208 1e-48 seq4 131 2e-25 >seq1 Length=763219 Score = 208 bits (230), Expect = 1e-48 Identities = 399/583 (68%), Gaps = 5/583 (1%) Strand=Plus/Plus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||||| ||||||||| | ||||| | ||||| ||||| | || || ||||||| || Sbjct 607194 GTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAGACCAGGCATTAAACC 607253 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 ||||| || |||||||| ||||| |||||| || || || || || ||||| ||||| Sbjct 607254 GCGCTTCTTGAGCCAAAAGATGGAGCAGAATGAGCCAGAGAAAAAAATGCCTTCAACTGC 607313 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTC-ATGTATCCACTTTTGAGC 33772 ||||||||| | ||| | ||| ||| | | | || || |||||| |||| Sbjct 607314 AGCAAAGGCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTGGATCGCACCACTTCAGAGC 607373 Query 33773 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33832 ||| | || || || | || ||||| || || || || ||| | |||| || || Sbjct 607374 CCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCACGTAGTAGATGGTCCTT 607433 Query 33833 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892 ||| | ||||||| ||| || || |||||||| |||| |||||| || || || Sbjct 607434 CTCAATCGCGTCTTTAATATACGTGTCAATCAAAAGCGAGTACACTTCCGAGTGTATATT 607493 Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC- 33951 || || || || ||||| ||||| || || | |||||| | | ||||||||| | | Sbjct 607494 CTCGATTGCGATTTGAAACCCGTAAAAGCAGCGAGCCTCTGGCACCTGCACTTCGTTGCT 607553 Query 33952 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATA 34011 ||||| | |||| |||||||||||| || || ||||| || ||||| || || | | Sbjct 607554 AAAATTCATG-GCTAGATTTTCATTCACAATGCCGTCACTAGCAGCAAAGAAAGCGAGCA 607612 Query 34012 CATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAG 34071 |||| || || ||||| |||| || || || |||||| || | ||| | Sbjct 607613 CATGCTTAATGAAATAACGCTCGTTGTCCGTGAGGCTAGCCCAATCTTTCAGATCGTGCA 607672 Query 34072 ATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGA 34131 | ||| | ||| || |||||||||| || || || || || || ||||| | ||| | Sbjct 607673 CCAGATCGAGTTCCTCAGCTGTCCAAAAAGAAGCTTCAGCTTTCTTGTACATCTGCCACA 607732 Query 34132 TGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 || || | || || || || | ||||| | ||| | ||| Sbjct 607733 CTTCGTGCTCCTGAATGGGAAAGAGCACAAAGCGATTGGAATT 607775 >seq4 Length=584709 Score = 131 bits (144), Expect = 2e-25 Identities = 775/1235 (63%), Gaps = 10/1235 (1%) Strand=Plus/Minus Query 62683 CGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATG 62742 ||||||| || ||||||||||| || ||| | || |||| |||| ||||||| Sbjct 120314 CGTAATAGATCGTTTCAAAGATTTTTCGATTCAAGTCGCGTGCGGATTGGCTCTCAAATG 120255 Query 62743 GATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62802 | |||| | ||||||||| || || || ||||| || || ||||| |||| || | | Sbjct 120254 CAAAATTCATGAGAATAAAAGCATCAGCCAATCCCTGCACGCCAATGCCGACCGGGCGGT 120195 Query 62803 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62862 | | | |||| || ||| |||||||| | ||||| || || | || || | || | Sbjct 120194 GGCGCATATTGGACGTTTGGGCTTCTGGCACTGGATAGTAGTTGACGTCAATGACCTTGT 120135 Query 62863 TGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62922 | | || | | ||||||||||| || | ||||| | | ||||| ||| | Sbjct 120134 TTAAGTTGCGCGTCACCACTTTGACCACGTCGTAGAGTTTCCGGTAGTCAAAGACCCCGT 120075 Query 62923 CTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCAT 62982 || |||||| || ||| || || || |||| || |||||||| || || | | | Sbjct 120074 CTTGCACAAACTTGGGCAAGGCCACCGACGCCAAGTTGCACACGGCCACTTCGTCCGAAG 120015 Query 62983 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 63042 || ||||| || | ||| ||| | |||||| | ||| || || | ||||| | Sbjct 120014 ACGTATATTCCATCACTTCACAGCACAAATTACTCGATCGGATCGTGCCAAGGTTTTGCT 119955 Query 63043 GATTACTCTTTTTGTTACAC-GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 63101 | || | ||| | | | | || || ||||| || ||| | || || || |||||| Sbjct 119954 GGTT-CGATTTGCGGTTCGCGGCGTCTTTATAGAGCATGTAAGGGACGCCCGTCTCAATC 119896 Query 63102 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT--TATAGATTTGTATCTCC 63159 |||| || | ||||| ||| | | || || || | | | | | || Sbjct 119895 TGAGCGTCGAGGATCGCAAACCATAGTTGCTGCGCATTGATCGTCTTG-CGGGCACGGCC 119837 Query 63160 TTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 63219 || || |||||| | ||||| || ||| |||| |||||| | || || | Sbjct 119836 TTCCT-GTTCGTACTGGACGTACAAGGCCTCAAACGCGTCACCCCAACGTTCGTACAGAC 119778 Query 63220 TAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63279 || ||| | ||||| | | |||| || | | | ||| || ||||||| Sbjct 119777 CCGGCGCTTCGTTGGGACAAAAGAGACTCCACGTGCCATTGGCTTCCACGCGCTTCATAA 119718 Query 63280 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTG 63339 ||||||| || | ||| | || | ||| | ||| | | | ||| |||||| || Sbjct 119717 AGAGATCCGGGACCCACAAGGCAAAAAACAAATCCCGAGCACGATGCAACTCGTTGCCGT 119658 Query 63340 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63399 || || | || || ||| | | | ||| | ||||| || || | || |||| Sbjct 119657 GGTTTTTCCGCAACTCTAGAAACTCAAACACATCGGCGTGCCAGGGCTCTAGATAGATGG 119598 Query 63400 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63459 | | || || || || || ||||| | ||| | || |||| ||| | | Sbjct 119597 CAAACGAGCCTTTGCGCTTCCCACCACCTTGATCAACGTACCGCGCCGTGTCATTGAAGA 119538 Query 63460 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCAC 63519 | | |||||||||||| || || || || || || || || ||| |||| Sbjct 119537 CGCGCAACATTGGAATGATGCCATTCGACGACCCGTTCGTGCCTCGGATGTAGCTGTTGG 119478 Query 63520 TGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63577 |||||||||| | | | | |||| || || || || ||| ||| || || | || Sbjct 119477 TGGCACGAATGTTGTGCATACTGAT--CCCGATCCCGCCGGCCCATTTCGAAATGCACGC 119420 Query 63578 GCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAA 63637 ||| | || | ||||||||| |||||||| || ||||| |||| | ||||| Sbjct 119419 ACATTGCTTGAGCGTGTCATAAATGCCTTCAATCGAGTCATCTTGCATGGCCAAGAGAAA 119360 Query 63638 ACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63697 || || | || |||||| ||| || || ||||| | || || | ||||| || Sbjct 119359 GCACGACGAGAGCTGTGGACGAGGAGTGCCTGCGTTAAAGAGCGTCGGTGTCGCGTGGGT 119300 Query 63698 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63757 ||| |||| | || | || | |||||||||| || | | || || | || Sbjct 119299 AAAGAATTTCTGCGACATGAGCTCATACGTCTCAAGCGCGGCCTTGATGTCGTGCTTGTG 119240 Query 63758 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTAT 63817 || || | ||| ||||| | | ||| || || || | || || | |||| || | Sbjct 119239 GATGCCCAATGCCACACGGAGAAGCATCTGTTGCGGACGCTCGACGACTTTGCCATTGAC 119180 Query 63818 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63877 || | ||| | || | |||||||| ||||| |||| |||| |||||| || Sbjct 119179 ACGAAAGAGGTACCCTCGCTCGAGCGTTTTAAACCCAAAGTAGTCGTATTCAAAGTCCCG 119120 Query 63878 TTCGTAAATAATAACCGAATTGAGCTTATCCTTAT 63912 ||||| || || | ||||| |||| || |||| Sbjct 119119 GTCGTATATGATGGCGGAATTCAGCTCGTCTTTAT 119085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629802775668240