Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1 239 6e-58 seq4 104 3e-17 >seq1 Length=763219 Score = 239 bits (264), Expect = 6e-58 Identities = 406/581 (70%), Gaps = 13/581 (2%) Strand=Plus/Plus Query 36172 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 36231 ||| | ||||||||| | ||||| | ||||| ||||| | || || ||||||| || Sbjct 607194 GTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAGACCAGGCATTAAACC 607253 Query 36232 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTG 36290 ||||| || |||||||| ||||| ||| ||||| ||||| || ||||| ||||| |||| Sbjct 607254 GCGCTTCTTGAGCCAAAAGATGGA-GCAGAATGAGCCAGAGAAAAAAATGCCTTCAACTG 607312 Query 36291 CCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT--ATC----CACTTTT 36344 | |||||||| | ||| | ||| ||| || | | | || ||| ||||| Sbjct 607313 CAGCAAAGGCCAAAAGCCGTTCTGGATA---GGAAGAGACCCGTGGATCGCACCACTTCA 607369 Query 36345 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGt 36404 ||||||| | || || || | || ||||| || ||||| |||||| | |||| || Sbjct 607370 GAGCCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCACGTAGTAGATGGT 607429 Query 36405 ttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAA 36464 || ||| | ||||||| ||| || ||||||||||| |||| |||||| || | Sbjct 607430 CCTTCTCAATCGCGTCTTTAATATACGTGTCAATCAAAAGCGAGTACACTTCCGAGTGTA 607489 Query 36465 TGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTG 36524 | || || || || |||||||| ||||| || || | |||||| | | ||| ||||| Sbjct 607490 TATTCTCGATTGCGATTTGAAACCCGTAAAAGCAGCGAGCCTCTGGCACCTGCACTTCGT 607549 Query 36525 TAC-AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 36583 | | ||||| | |||| |||||||||||| || |||||||| || ||||| || || Sbjct 607550 TGCTAAAATTCAT-GGCTAGATTTTCATTCACAATGCCGTCACTAGCAGCAAAGAAAGCG 607608 Query 36584 AATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCT 36643 | ||||| || || ||||| ||||| || || || |||||| || | ||| Sbjct 607609 AGCACATGCTTAATGAAATAACGCTCGTTGTCCGTGAGGCTAGCCCAATCTTTCAGATCG 607668 Query 36644 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 36703 | | ||| | ||| || |||||||||| || || || || || || ||||| | | Sbjct 607669 TGCACCAGATCGAGTTCCTCAGCTGTCCAAAAAGAAGCTTCAGCTTTCTTGTACATCTGC 607728 Query 36704 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATT 36744 || | || || | ||||| ||||| | ||||| | ||| Sbjct 607729 CACACTTCGTGCTCCTGAATGGGAAAGAGCACAAAGCGATT 607769 >seq4 Length=584709 Score = 104 bits (114), Expect = 3e-17 Identities = 769/1235 (62%), Gaps = 10/1235 (1%) Strand=Plus/Minus Query 65476 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 65535 ||||||| || ||||| ||||| || ||| | || |||| |||| ||||||| Sbjct 120314 CGTAATAGATCGTTTCAAAGATTTTTCGATTCAAGTCGCGTGCGGATTGGCTCTCAAATG 120255 Query 65536 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 65595 | |||| | ||||||||| || || || ||||| || || ||||| |||| || | | Sbjct 120254 CAAAATTCATGAGAATAAAAGCATCAGCCAATCCCTGCACGCCAATGCCGACCGGGCGGT 120195 Query 65596 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 65655 | | | |||| || ||| |||||||| | ||||| || || | || || | || | Sbjct 120194 GGCGCATATTGGACGTTTGGGCTTCTGGCACTGGATAGTAGTTGACGTCAATGACCTTGT 120135 Query 65656 TGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCAT 65715 | | || | | ||||||||||| || | ||||| | | ||||| | | | Sbjct 120134 TTAAGTTGCGCGTCACCACTTTGACCACGTCGTAGAGTTTCCGGTAGTCAAAGACCCCGT 120075 Query 65716 CTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 65775 || |||||| || ||| || || || |||| || || ||||| || || | | | Sbjct 120074 CTTGCACAAACTTGGGCAAGGCCACCGACGCCAAGTTGCACACGGCCACTTCGTCCGAAG 120015 Query 65776 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 65835 || ||||| || | ||| ||| | |||||| | ||| || || | ||||| | Sbjct 120014 ACGTATATTCCATCACTTCACAGCACAAATTACTCGATCGGATCGTGCCAAGGTTTTGCT 119955 Query 65836 GATTACTCTTTTTGTTACAC-GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 65894 | || | ||| | | | | || || ||||| || ||| | || || || |||||| Sbjct 119954 GGTT-CGATTTGCGGTTCGCGGCGTCTTTATAGAGCATGTAAGGGACGCCCGTCTCAATC 119896 Query 65895 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT--TATAGATTTGTATCTCT 65952 |||| || | ||||| ||| | | || || || | | | | | | Sbjct 119895 TGAGCGTCGAGGATCGCAAACCATAGTTGCTGCGCATTGATCGTCTTG-CGGGCACGGCC 119837 Query 65953 TTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 66012 || || |||||| | ||||| || ||| |||| |||||| | || || | Sbjct 119836 TTCCT-GTTCGTACTGGACGTACAAGGCCTCAAACGCGTCACCCCAACGTTCGTACAGAC 119778 Query 66013 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 66072 | || ||| | ||||| | | |||| || | | | ||| || ||||||| Sbjct 119777 CCGGCGCTTCGTTGGGACAAAAGAGACTCCACGTGCCATTGGCTTCCACGCGCTTCATAA 119718 Query 66073 AGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTG 66132 ||||||| || | ||| | || | ||| ||||| | | | ||| |||||| || Sbjct 119717 AGAGATCCGGGACCCACAAGGCAAAAAACAAATCCCGAGCACGATGCAACTCGTTGCCGT 119658 Query 66133 TATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGG 66192 || || | || || ||| | | | ||| ||||| || || | || |||| Sbjct 119657 GGTTTTTCCGCAACTCTAGAAACTCAAACACATCGGCGTGCCAGGGCTCTAGATAGATGG 119598 Query 66193 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 66252 | | || || || || || ||||| | ||| | || |||| ||| | | Sbjct 119597 CAAACGAGCCTTTGCGCTTCCCACCACCTTGATCAACGTACCGCGCCGTGTCATTGAAGA 119538 Query 66253 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 66312 | | |||||||||||| || ||||| || | || || || || ||| ||||| Sbjct 119537 CGCGCAACATTGGAATGATGCCATTCGACGACCCGTTCGTGCCTCGGATGTAGCTGTTGG 119478 Query 66313 TTGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 66370 | |||||||| | | | | |||| || || || || ||| ||| || || | || Sbjct 119477 TGGCACGAATGTTGTGCATACTGAT--CCCGATCCCGCCGGCCCATTTCGAAATGCACGC 119420 Query 66371 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 66430 ||| | || | ||| ||||| ||||| || || ||||| |||| | ||||| Sbjct 119419 ACATTGCTTGAGCGTGTCATAAATGCCTTCAATCGAGTCATCTTGCATGGCCAAGAGAAA 119360 Query 66431 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 66490 || || | || ||||| ||| || || ||||| | || || | ||||| || Sbjct 119359 GCACGACGAGAGCTGTGGACGAGGAGTGCCTGCGTTAAAGAGCGTCGGTGTCGCGTGGGT 119300 Query 66491 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 66550 ||| |||| | || | || | |||||||||| || | | || || | || Sbjct 119299 AAAGAATTTCTGCGACATGAGCTCATACGTCTCAAGCGCGGCCTTGATGTCGTGCTTGTG 119240 Query 66551 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 66610 || || | ||| ||||| | | ||| || || || | || |||| ||| || | Sbjct 119239 GATGCCCAATGCCACACGGAGAAGCATCTGTTGCGGACGCTCGACGACTTTGCCATTGAC 119180 Query 66611 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 66670 || | ||| | || | |||||||| ||||| |||| |||| |||||| || Sbjct 119179 ACGAAAGAGGTACCCTCGCTCGAGCGTTTTAAACCCAAAGTAGTCGTATTCAAAGTCCCG 119120 Query 66671 TTCGTAAATAATAACCGAGTTGAGTTTATCCTTAT 66705 ||||| || || | || || || | || |||| Sbjct 119119 GTCGTATATGATGGCGGAATTCAGCTCGTCTTTAT 119085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658157308257720