Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 226 4e-54 seq4 122 1e-22 >seq1 Length=763219 Score = 226 bits (250), Expect = 4e-54 Identities = 416/603 (69%), Gaps = 9/603 (1%) Strand=Plus/Plus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||||| ||||||||| | ||||| || ||||| ||||| | || || ||||||| || Sbjct 607194 GTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAGACCAGGCATTAAACC 607253 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCTTCTACTG 50092 ||||| || |||||||| ||||| ||| ||||| ||||| || || || ||||| |||| Sbjct 607254 GCGCTTCTTGAGCCAAAAGATGGA-GCAGAATGAGCCAGAGAAAAAAATGCCTTCAACTG 607312 Query 50093 CGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG--CTGTC-ATGTATCCACTTTTGAG 50149 | |||||||| | ||| | ||| ||| | | | || || |||||| ||| Sbjct 607313 CAGCAAAGGCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTGGATCGCACCACTTCAGAG 607372 Query 50150 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 50209 |||| | || || || | || ||||| || || || || ||| | |||| || | Sbjct 607373 CCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCACGTAGTAGATGGTCCT 607432 Query 50210 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 50269 | ||| | ||||||| ||| || || |||||||| |||| |||||| || || | Sbjct 607433 TCTCAATCGCGTCTTTAATATACGTGTCAATCAAAAGCGAGTACACTTCCGAGTGTATAT 607492 Query 50270 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 50329 | || || || || ||||| ||||| || || | |||||| | | ||||||||| | | Sbjct 607493 TCTCGATTGCGATTTGAAACCCGTAAAAGCAGCGAGCCTCTGGCACCTGCACTTCGTTGC 607552 Query 50330 AAAATCGTTCA--GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 50387 ||| |||| |||| |||||||||||| || |||||||| || ||||| || || | Sbjct 607553 TAAAA--TTCATGGCTAGATTTTCATTCACAATGCCGTCACTAGCAGCAAAGAAAGCGAG 607610 Query 50388 TACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTT 50447 ||||| || || |||| |||||| || || || |||||| || | ||| | Sbjct 607611 CACATGCTTAATGAAATAACGCTCGTTGTCCGTGAGGCTAGCCCAATCTTTCAGATCGTG 607670 Query 50448 AGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 50507 | ||| | ||| || |||||||||| || || || || || || ||||| | ||| Sbjct 607671 CACCAGATCGAGTTCCTCAGCTGTCCAAAAAGAAGCTTCAGCTTTCTTGTACATCTGCCA 607730 Query 50508 GATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGATCGG 50567 | || || | || || || || | ||||| | ||| | ||| | |||| | ||| Sbjct 607731 CACTTCGTGCTCCTGAATGGGAAAGAGCACAAAGCGATTGGAATTCGCAACAAGAAACGG 607790 Query 50568 TTC 50570 || Sbjct 607791 CTC 607793 >seq4 Length=584709 Score = 122 bits (134), Expect = 1e-22 Identities = 773/1235 (63%), Gaps = 10/1235 (1%) Strand=Plus/Minus Query 79355 CGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATG 79414 ||||||| || ||||| || || || ||| | || |||| | |||| ||||||| Sbjct 120314 CGTAATAGATCGTTTCAAAGATTTTTCGATTCAAGTCGCGTGCGGATTGGCTCTCAAATG 120255 Query 79415 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 79474 | |||| | ||||||||| || || || ||||| || || ||||| |||| || | | Sbjct 120254 CAAAATTCATGAGAATAAAAGCATCAGCCAATCCCTGCACGCCAATGCCGACCGGGCGGT 120195 Query 79475 GTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 79534 | | | |||| || ||| |||||||| | ||||| || || | || || | || | Sbjct 120194 GGCGCATATTGGACGTTTGGGCTTCTGGCACTGGATAGTAGTTGACGTCAATGACCTTGT 120135 Query 79535 TGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCAT 79594 | | || | | ||||||||||| || | ||||| | | ||||| || | Sbjct 120134 TTAAGTTGCGCGTCACCACTTTGACCACGTCGTAGAGTTTCCGGTAGTCAAAGACCCCGT 120075 Query 79595 CTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 79654 || |||||| || ||| || || || |||| || || ||||| || || | | | Sbjct 120074 CTTGCACAAACTTGGGCAAGGCCACCGACGCCAAGTTGCACACGGCCACTTCGTCCGAAG 120015 Query 79655 CCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTT 79714 || ||||| || | |||| ||| | ||||| | || || || | ||||| | Sbjct 120014 ACGTATATTCCATCACTTCACAGCACAAATTACTCGATCGGATCGTGCCAAGGTTTTGCT 119955 Query 79715 GATTACTCTTTTTGTTACAC-GCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATC 79773 | || | ||| | | | | || || ||||| || ||| | || || || |||||| Sbjct 119954 GGTT-CGATTTGCGGTTCGCGGCGTCTTTATAGAGCATGTAAGGGACGCCCGTCTCAATC 119896 Query 79774 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT--TATAGACTTGTATCTCT 79831 |||| || | ||||| ||| | | || || || | | | | | | | Sbjct 119895 TGAGCGTCGAGGATCGCAAACCATAGTTGCTGCGCATTGATCGTCTTG-CGGGCACGGCC 119837 Query 79832 TTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATC 79891 || || |||||| || || || || ||| |||| |||||| |||| | | Sbjct 119836 TTCCT-GTTCGTACTGGACGTACAAGGCCTCAAACGCGTCACCCCAACGTTCGTACAGAC 119778 Query 79892 CAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAA 79951 | || ||||| ||||| | | |||| |||| | | || || ||||||| Sbjct 119777 CCGGCGCTTCGTTGGGACAAAAGAGACTCCACGTGCCATTGGCTTCCACGCGCTTCATAA 119718 Query 79952 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 80011 ||||||| || | ||| | || | ||| | ||| | | | |||| |||||| || Sbjct 119717 AGAGATCCGGGACCCACAAGGCAAAAAACAAATCCCGAGCACGATGCAACTCGTTGCCGT 119658 Query 80012 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 80071 || || | || || ||| | | | ||| | ||||| || || | || |||| Sbjct 119657 GGTTTTTCCGCAACTCTAGAAACTCAAACACATCGGCGTGCCAGGGCTCTAGATAGATGG 119598 Query 80072 CCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 80131 | | || || || || || ||||| | ||| | || |||| ||| | | Sbjct 119597 CAAACGAGCCTTTGCGCTTCCCACCACCTTGATCAACGTACCGCGCCGTGTCATTGAAGA 119538 Query 80132 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 80191 | | |||||||||||| || ||||| || | || || || || ||| ||||| Sbjct 119537 CGCGCAACATTGGAATGATGCCATTCGACGACCCGTTCGTGCCTCGGATGTAGCTGTTGG 119478 Query 80192 TGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 80249 |||||||||| | | | | |||| || || || || ||| ||| || || | || Sbjct 119477 TGGCACGAATGTTGTGCATACTGAT--CCCGATCCCGCCGGCCCATTTCGAAATGCACGC 119420 Query 80250 GCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAA 80309 ||| | || | ||| ||||| ||||| || || ||||| |||| | ||||| Sbjct 119419 ACATTGCTTGAGCGTGTCATAAATGCCTTCAATCGAGTCATCTTGCATGGCCAAGAGAAA 119360 Query 80310 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 80369 || || | || ||||| ||| || || ||||| | || || | ||||| || Sbjct 119359 GCACGACGAGAGCTGTGGACGAGGAGTGCCTGCGTTAAAGAGCGTCGGTGTCGCGTGGGT 119300 Query 80370 AAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATG 80429 ||| |||| | |||| || | |||||||||| || | | || || | || Sbjct 119299 AAAGAATTTCTGCGACATGAGCTCATACGTCTCAAGCGCGGCCTTGATGTCGTGCTTGTG 119240 Query 80430 AATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTAT 80489 || || | || ||||| | | ||| || || || | || |||| ||| ||| | Sbjct 119239 GATGCCCAATGCCACACGGAGAAGCATCTGTTGCGGACGCTCGACGACTTTGCCATTGAC 119180 Query 80490 TTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 80549 || | ||| | || | |||||||| ||||| |||| |||| |||||| || Sbjct 119179 ACGAAAGAGGTACCCTCGCTCGAGCGTTTTAAACCCAAAGTAGTCGTATTCAAAGTCCCG 119120 Query 80550 TTCGTAAATAATAACCGAGTTGAGTTTATCCTTAT 80584 ||||| || || | || || || | || |||| Sbjct 119119 GTCGTATATGATGGCGGAATTCAGCTCGTCTTTAT 119085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718251893748120