Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1 140 3e-28 >seq1 Length=763219 Score = 140 bits (154), Expect = 3e-28 Identities = 367/550 (67%), Gaps = 10/550 (2%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 |||||||| || || | ||||| || | |||||||| ||||||||||| ||| Sbjct 607180 CACGCAAAGTCCGTGTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAGA 607239 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAA 13990 || ||||| || || || || || | |||||| || | |||| ||||| || || || || Sbjct 607240 CCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGATGG-AGCAGAATGAGCCAGAGAAAAA 607298 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT--TTGTTC 14048 || || |||||||||||||| || | | |||||| | | || | | | || Sbjct 607299 AATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTGGATC 607358 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 | ||| || |||||| | | |||||| | | || || || || |||||| Sbjct 607359 GCA--CCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCA 607416 Query 14109 TTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TA 14167 | || || |||||||| | | | ||| || || ||||| | |||| | || Sbjct 607417 CGTAGTAGATGGTCCTTCTCAATCGCGTCTTTAATATACGTGTCAATCAA-AAGCGAGTA 607475 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGA 14227 || ||| |||||||| || || || || || ||||| || |||||||| | ||| || | Sbjct 607476 CACTTCCGAGTGTATATTCTCGATTGCGATTTGAAACCCGTAAAAGCAGCGAGCCTCTGG 607535 Query 14228 CCATTGTACTTCCGAG-TAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14286 | || ||||| | |||||| | ||| | ||||||||| || || || ||||||| Sbjct 607536 CACCTGCACTTCGTTGCTAAAATTCAT-GGCTAGATTTTCATTCACAATGCCGTCACTAG 607594 Query 14287 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCC 14346 | ||||| || || | | | ||||| || || |||| | | |||| | || Sbjct 607595 CAGCAAAGAAAGCGAGCACATGCTTAATGAAATAACGCTCGTTGTCCGTGAGGCTAGCCC 607654 Query 14347 AATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14406 |||| | ||| | ||||| | ||| ||| ||||||||||| ||| |||||| Sbjct 607655 AATCTTTCAGATCGTGCACCAGATCGAGTTCCTCAGCTGTCCAAAAAGAAGCTTCAGCTT 607714 Query 14407 TTTTATACAT 14416 | || ||||| Sbjct 607715 TCTTGTACAT 607724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479716708402200