Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1 140 3e-28 >seq1 Length=763219 Score = 140 bits (154), Expect = 3e-28 Identities = 368/550 (67%), Gaps = 10/550 (2%) Strand=Plus/Plus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 |||||||| || || | ||||| || | |||||||| ||||||||||| ||| Sbjct 607180 CACGCAAAGTCCGTGTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAGA 607239 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAA 13778 || ||||| || || || || || | |||||| || | ||| |||||| || || || || Sbjct 607240 CCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGATGG-AGCAGAATGAGCCAGAGAAAAA 607298 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTT-TGTTTG 13837 || || |||||||||||||| || | || |||||| | | || | || | Sbjct 607299 AATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTGGATC 607358 Query 13838 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCAT 13897 | ||| || |||||| | | |||||| | | || || || ||||| ||| Sbjct 607359 GCA-CCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCAC 607417 Query 13898 TGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TAC 13956 | || ||| |||||||| | | | ||| || || ||||| | |||| | ||| Sbjct 607418 GTAGTAGATGGTCCTTCTCAATCGCGTCTTTAATATACGTGTCAATCAA-AAGCGAGTAC 607476 Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016 | ||| |||||||| || || || || || ||||| || ||||| || | ||| |||| | Sbjct 607477 ACTTCCGAGTGTATATTCTCGATTGCGATTTGAAACCCGTAAAAGCAGCGAGCCTCTGGC 607536 Query 14017 CATTGTACCTCCGAG-TAAAATCTTTCTGCCAAG-TTTTCATTAACAATACCATCACTAG 14074 || || || | |||||| | || | || |||||||| ||||| || ||||||| Sbjct 607537 ACCTGCACTTCGTTGCTAAAAT--TCATGGCTAGATTTTCATTCACAATGCCGTCACTAG 607594 Query 14075 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCC 14134 | ||||| || || | | | ||||| || || |||| | | |||| | || Sbjct 607595 CAGCAAAGAAAGCGAGCACATGCTTAATGAAATAACGCTCGTTGTCCGTGAGGCTAGCCC 607654 Query 14135 AATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14194 |||| | ||| | ||||| | ||| ||| ||||||||||| ||| |||||| Sbjct 607655 AATCTTTCAGATCGTGCACCAGATCGAGTTCCTCAGCTGTCCAAAAAGAAGCTTCAGCTT 607714 Query 14195 TTTTATACAT 14204 | || ||||| Sbjct 607715 TCTTGTACAT 607724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478577535216120