Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4 138 2e-27 >seq4 Length=584709 Score = 138 bits (152), Expect = 2e-27 Identities = 774/1232 (63%), Gaps = 8/1232 (1%) Strand=Plus/Minus Query 71440 TAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGA 71499 ||||| || ||||| || || || ||| | || |||| |||| ||||||| | Sbjct 120312 TAATAGATCGTTTCAAAGATTTTTCGATTCAAGTCGCGTGCGGATTGGCTCTCAAATGCA 120253 Query 71500 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGT 71559 |||| | ||||||||| || || || ||||| || |||||||| |||| || | ||| Sbjct 120252 AAATTCATGAGAATAAAAGCATCAGCCAATCCCTGCACGCCAATGCCGACCGGGCGGTGG 120193 Query 71560 CTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 71619 | | |||| || ||| |||||||| | ||||| || || | || || | || || Sbjct 120192 CGCATATTGGACGTTTGGGCTTCTGGCACTGGATAGTAGTTGACGTCAATGACCTTGTTT 120133 Query 71620 AGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCT 71679 | || | | ||||||||||| || | ||||| | | ||||| ||| ||| Sbjct 120132 AAGTTGCGCGTCACCACTTTGACCACGTCGTAGAGTTTCCGGTAGTCAAAGACCCCGTCT 120073 Query 71680 ATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCG 71739 |||||| | |||||| || || |||| || || ||||| || || | | | Sbjct 120072 TGCACAAACTTGGGCAAGGCCACCGACGCCAAGTTGCACACGGCCACTTCGTCCGAAGAC 120013 Query 71740 GCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 71799 | ||||| || | |||| ||| | |||||| | ||| || || | ||||| || Sbjct 120012 GTATATTCCATCACTTCACAGCACAAATTACTCGATCGGATCGTGCCAAGGTTTTGCTGG 119953 Query 71800 TTACTCTTTTTGTTACAC-GCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTG 71858 || | ||| | | | | || || ||||| || || | || || || |||||||| Sbjct 119952 TT-CGATTTGCGGTTCGCGGCGTCTTTATAGAGCATGTAAGGGACGCCCGTCTCAATCTG 119894 Query 71859 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATT-CTTGTATCTCTTTT 71917 || || | ||||| ||| | | || || || | || | | | | || Sbjct 119893 AGCGTCGAGGATCGCAAACCATAGTTGCTGCGCATTGATCGTCTTGCGGGCACGGCCTTC 119834 Query 71918 CTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAG 71977 || |||||| || || || || ||| |||| |||||| | || | || | Sbjct 119833 CT-GTTCGTACTGGACGTACAAGGCCTCAAACGCGTCACCCCAACGTTCGTACAGACCCG 119775 Query 71978 GACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGA 72037 | ||| || ||||| | | |||| |||| | | || || |||||||||| Sbjct 119774 GCGCTTCGTTGGGACAAAAGAGACTCCACGTGCCATTGGCTTCCACGCGCTTCATAAAGA 119715 Query 72038 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTAT 72097 |||| || | ||| | || | ||| | ||| | | | |||| |||||| || | Sbjct 119714 GATCCGGGACCCACAAGGCAAAAAACAAATCCCGAGCACGATGCAACTCGTTGCCGTGGT 119655 Query 72098 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 72157 | || | || || ||| | | | ||| | ||||| || || | || ||||| | Sbjct 119654 TTTTCCGCAACTCTAGAAACTCAAACACATCGGCGTGCCAGGGCTCTAGATAGATGGCAA 119595 Query 72158 TAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 72217 || || || || || ||||| | ||| | || |||| ||| | || | Sbjct 119594 ACGAGCCTTTGCGCTTCCCACCACCTTGATCAACGTACCGCGCCGTGTCATTGAAGACGC 119535 Query 72218 TCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGG 72277 |||||||||||| || ||||| || | || || || || ||| ||||| ||| Sbjct 119534 GCAACATTGGAATGATGCCATTCGACGACCCGTTCGTGCCTCGGATGTAGCTGTTGGTGG 119475 Query 72278 CACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 72335 ||||||| | ||| | |||| || || || || ||| ||| || || | || || Sbjct 119474 CACGAATGTTGTGCATACTGAT--CCCGATCCCGCCGGCCCATTTCGAAATGCACGCACA 119417 Query 72336 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 72395 | | || | ||| ||||| ||||| || || ||||| |||| | ||||| || Sbjct 119416 TTGCTTGAGCGTGTCATAAATGCCTTCAATCGAGTCATCTTGCATGGCCAAGAGAAAGCA 119357 Query 72396 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 72455 || | || ||||| ||| || || ||||| | || || | ||||| ||||| Sbjct 119356 CGACGAGAGCTGTGGACGAGGAGTGCCTGCGTTAAAGAGCGTCGGTGTCGCGTGGGTAAA 119297 Query 72456 CCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTAT 72515 |||| | |||| || | |||||||||| || | | || || | || || Sbjct 119296 GAATTTCTGCGACATGAGCTCATACGTCTCAAGCGCGGCCTTGATGTCGTGCTTGTGGAT 119237 Query 72516 TCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 72575 || | || ||||| | | ||| || || || | || |||| ||| ||| | Sbjct 119236 GCCCAATGCCACACGGAGAAGCATCTGTTGCGGACGCTCGACGACTTTGCCATTGACACG 119177 Query 72576 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 72635 || | ||| | || | |||||||| ||||| |||| |||| |||||| || || Sbjct 119176 AAAGAGGTACCCTCGCTCGAGCGTTTTAAACCCAAAGTAGTCGTATTCAAAGTCCCGGTC 119117 Query 72636 GTAAATAATAACCGAATTGAGTTTATCCTTAT 72667 ||| || || | ||||| || | || |||| Sbjct 119116 GTATATGATGGCGGAATTCAGCTCGTCTTTAT 119085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671123403061080