Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 140 5e-28 seq154 136 6e-27 seq4 125 1e-23 seq317 123 4e-23 >seq1 Length=763219 Score = 140 bits (154), Expect = 5e-28 Identities = 580/883 (66%), Gaps = 58/883 (7%) Strand=Plus/Minus Query 124995 CTGTTTCCCAT-CAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 || |||||||| |||| | || || | ||| | |||||||| || ||| | || || || Sbjct 607757 CTCTTTCCCATTCAGG-AGCACGAAGTGTGGCAGATGTACAAGAAAGCTGAAGCTTCTTT 607699 Query 125054 TTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGAC 125113 |||||| | || || |||||||| | || ||| | ||||||| || | | || Sbjct 607698 TTGGACAGCTGAGGAACTCGATCTGGTGCACGATCTGAAAGATTGGG---CTAGCCTCAC 607642 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || | ||||| | || || ||| | | || |||||||| | || || || Sbjct 607641 GGACAACGAGCGTTATTTCATTAAGCATGTGCTCGCTTTCTTTGCTGCTAGTGACGGCAT 607582 Query 125174 CGTCAACGACAATCTGTTGACACGA-TTCTCTCAA-GAGTTGACCATTCCAGAGGTGTCG 125231 || || || ||||| | || || || | ||| || || | ||||||| ||| Sbjct 607581 TGTGAATGAAAATCTA--GCCATGAATTTTAGCAACGAAGTGCAGGTGCCAGAGGC-TCG 607525 Query 125232 -TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290 ||||||||||| || |||||| || ||||| | ||||||||| ||||||| | Sbjct 607524 CTGCTTTTACGGGTTTCAAATCGCAATCGAGAATATACACTCGGAAGTGTACTCGCTTTT 607465 Query 125291 GATTGACATGTACATT-----CGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATC 125345 |||||||| ||| ||| |||||| || | || ||| || | || ||| Sbjct 607464 GATTGACACGTATATTAAAGACGCGATTGAGAAGG---AC-CAT-CTACTACGTGCTATC 607410 Query 125346 GACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGAC 125405 || || | || | | ||||| || || |||| | |||| |||| | || Sbjct 607409 GAGACTATCCCTTGCGTCACCAAAAAAGCGCACTGGGCTCTGAAGTGGTGCGAT--CCAC 607352 Query 125406 AAGTCT--TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 |||| || || | || | || |||| || || || || || ||||| || || | Sbjct 607351 GGGTCTCTTCCTATCCAGAACGGCTTTTGGCCTTTGCTGCAGTTGAAGGCATTTTTTTCT 607292 Query 125464 CGGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 | || | || ||| ||||||||||||||||||||||||| | ||||| || || | | Sbjct 607291 CTGGCTCATTCTGCT-CCATCTTTTGGCTCAAGAAGCGCGGTTTAATGCCTGGTCTAA-G 607234 Query 125523 CA---CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTA 125579 | || |||||| |||| || |||||||| | ||| |||||||| || Sbjct 607233 CTTTTCA--AACGAGCTTATTAGCCGGGACGAGGGTATGCACACGGACTTTGCGTGCCTT 607176 Query 125580 CTGTTTCGCAACTATCTGCGTC-CCGAG-TGC-AGA-TCCAGCG---ATGAAAAGGTCAT 125632 ||| ||| | || ||| || || ||| ||| | | ||| | |||| |||| Sbjct 607175 TTGTACTCCAAAT---TG-GTCACCAAGCTGCCAGAATACCGCGTGCACGAAA---TCAT 607123 Query 125633 CAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGT 125692 | | |||||| ||| ||| ||||| ||||| | || || || ||||| Sbjct 607122 -----TCG----CGATGCTGTGGCGATTGAACACGAGTTCGTGCGTGACTCGCTCCCGGT 607072 Query 125693 C-AGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATC 125751 | ||| ||||||||||||||| || |||||| |||||| || |||||||| |||| Sbjct 607071 CGAGC-TGATTGGCATGAACTCGGGCCTCATGTGCCTGTACATTGAATTTGTGGCTGATC 607013 Query 125752 GTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCA 125811 |||| || ||| | || | |||||| ||| | || ||||| || || |||| | Sbjct 607012 GTCTGCTTTACTCGCTGGGAGTATCCAAGATCTACCATGCAAAGAACCCATTCGATTGGA 606953 Query 125812 TGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAA 125854 || || || || || |||| ||||| |||||||| ||||| Sbjct 606952 TGGACATGATCTCTCTCCAGGGCAAGACGAACTTTTTTGAGAA 606910 >seq154 Length=161528 Score = 136 bits (150), Expect = 6e-27 Identities = 290/425 (68%), Gaps = 6/425 (1%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || || || || || || ||||| || || ||| | |||| || |||||||| || Sbjct 91923 GGGGACCTTGGACCGGTATACGGCTTTCAATGGCGTCACTTTGGAGCCAAGTATACGAAC 91982 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATTGACACTC 70184 ||| | | ||||| | || || || |||||||| ||||||| | || || | | Sbjct 91983 ATGCATG-CTGACTACACTGGCCAAGGCGTTGATCAGCTTGCAGAGG-TAATCGAAAAGC 92040 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | || |||||||| || | |||| || ||| |||||||||| || ||||| Sbjct 92041 TGCGAACGAATCCAACGGACCGACGGATTGTTTTGTCGGCATGGAATCCAGCCGATTTAA 92100 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGATGGCAAA 70303 || |||||||||| || || || ||| ||||| || || || || | |||| | Sbjct 92101 ACGAAATGGCACTTCCTCCTTGCCACATGTTTTGC-CAATTCTATGTGGCAAATGGAGAG 92159 Query 70304 TTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATT 70363 ||||| || |||||| ||| | ||||||||||| || ||||| || ||||| || Sbjct 92160 TTGTCGTGTCAAATGTACCAGCGCTCGGCCGACATGGGACTTGGTGTGCCGTTTAATATC 92219 Query 70364 GCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAG 70423 || ||||| | || |||| | | ||||||| | || || || || | ||| Sbjct 92220 GCTAGCTACGCACTGCTGACACGTCTTGTTGCTCAAGTGACTGGGCTCAAGCCTGGCGAA 92279 Query 70424 TTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTG 70483 || | ||| ||||||||| || |||||||||||||||||| | | |||| || || Sbjct 92280 TTTATCCACGTCATTGGCGATGCACACGTGTATTTAAATCACGTGGTGCCACTACAGAAA 92339 Query 70484 CAACT 70488 ||||| Sbjct 92340 CAACT 92344 >seq4 Length=584709 Score = 125 bits (138), Expect = 1e-23 Identities = 323/480 (67%), Gaps = 14/480 (3%) Strand=Plus/Plus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAAC 96965 ||| |||| | || || |||||||| || || ||||| ||| | ||| |||| |||||| Sbjct 119597 GCCATCTATCTAGAGCCCTGGCACGCCGATGTGTTTGAGTTTCTAGAGTTGCGGAAAAAC 119656 Query 96966 TCTGGCTTTGAAGAGGCA-CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTT 97024 ||| || | ||| || || |||| ||||||| ||| | ||||| || ||| | Sbjct 119657 CACGGCAACGA-GTTGCATCGTGCTCGGGATTTGTTTTTTGCCTTGTGGGTCCCGGATCT 119715 Query 97025 GTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACC 97084 || ||||||||||| | | | |||| ||||| || | || ||| || | || Sbjct 119716 CTTTATGAAGCGCGTGGAAGCCAATGGCACGTGGAGTCTCTTTTGTCCCAACGAAGCGCC 119775 Query 97085 CGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCC--TACGAGCAA 97142 ||||||| ||| | ||||| || | |||||||||| || ||| || ||||| || Sbjct 119776 GGGTCTGTACGAACGTTGGGGTGACGCGTTTGAGGCCTTGT--ACGTCCAGTACGAACAG 119833 Query 97143 GAGGGCCG-ATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGT-GACGG 97200 || ||||| || |||||| || |||| | |||| ||| || ||| | ||| | Sbjct 119834 GAAGGCCGTGCCCGCAAGACGA-TCAATGCGCAGCAACTATGGTTTGCGATCCTCGAC-G 119891 Query 97201 CTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCA 97260 ||||| | ||||| || || ||||| ||||| || || ||| ||| ||||| | Sbjct 119892 CTCAGATTGAGACGGGCGTCCCTTACATGCTCTATAAAGACGCCGCGAACCGCAAATCGA 119951 Query 97261 ACCAACGCCACTTGGGCACCATC--AAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTA 97318 |||| | || | ||||| ||| | | | ||| ||||| ||| | | || || Sbjct 119952 ACCAGCAAAACCTTGGCACGATCCGATCGAGT--AATTTGTGCTGTGAAGTGATGGAATA 120009 Query 97319 CGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGT 97378 | ||| ||||||| ||| || ||| |||| ||||| ||||||||||||| Sbjct 120010 TACGTCTTCGGACGAAGTGGCCGTGTGCAACTTGGCGTCGGTGGCCTTGCCCAAGTTTGT 120069 >seq317 Length=75193 Score = 123 bits (136), Expect = 4e-23 Identities = 430/670 (64%), Gaps = 46/670 (7%) Strand=Plus/Plus Query 127120 CCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTCACAATGTCACAATACTCA 127179 || || ||||| || | || | ||||||||| || || |||||||||||||||| ||| Sbjct 58124 CCAGCACGAGGTCCCCGCAGCGACTTGTGCGTGGTCGTAGTCACAATGTCACAATGATCA 58183 Query 127180 AAGGGGCCAGGAATGA-CTTTGCCCGCAATCAAGCCCGCAAT-GTGTGCAATATCGGCCA 127237 || || | || || | || ||||| | || |||| | ||| || || ||| || Sbjct 58184 AAAGGACT-GGCGTGCTCCTTCGTCGCAA-CGAGGCCGCTGTAGTGGGCCATGTCGCACA 58241 Query 127238 TCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTATAGTCCAAGCGCCGAG 127297 | |||| | |||| |||||||||| | || ||| ||||||| | || | Sbjct 58242 TGAGCAGAGCGCCGTTGTCATCGGCAATTTTACGAAATGCAGCATAGTCCCAATCACGCG 58301 Query 127298 GATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGATTGGCACTCTCGGCAA 127357 |||| ||| ||| ||| || | | ||||||||| ||| ||| |||||| | Sbjct 58302 GATACGCGCTGCCGCCACATATAATCATCGCAGGTTTGAAAAGAGCGGCTTGCTCGGCGA 58361 Query 127358 GTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTACGGCATGCTTTCGAAAA 127417 | || || |||| | |||||||| | || | ||| |||||||| | ||||||| Sbjct 58362 GCTTCTCAAAGTCAATCAGTCCAGTGTCAGCGTTCACGCGGTACGGCAAGGATTCGAAAT 58421 Query 127418 AGAGTGATGTAGCGGACACG---TTGCGG---------------------------AATC 127447 | | || || || |||||| ||||| || | Sbjct 58422 ACACAGACGTGGCAGACACGGCCTTGCGCGTGTTCTCTGCCTTTGAGTACGTGTAAAACC 58481 Query 127448 CGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAA 127507 |||| |||||||| ||||| |||| || | |||||||| | | || || | Sbjct 58482 CGTGGGTCAGGTGACCTCCACTAGGCAAGTCTAAACCCATGATGCGGTCATGTGGGCGCA 58541 Query 127508 CGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTC 127567 | | ||||||||||||||||| || |||||||||||| || || ||| || | Sbjct 58542 GCAGAGCCGTGTACACGGCAAAGTTAGCGGGCGAGCCCGAGTATGGCTGCACATTGACGC 58601 Query 127568 CCCA---TTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTT 127624 |||| ||| | | | ||||| | ||||| ||| |||||||| | | || Sbjct 58602 CCCACTTTTCAG---CATCCAAATCGTACGCTGCAAGAGCGCGCTGCTGGCACAAGATTT 58658 Query 127625 CGATGCGATCGATAAACTCGTTACCACCATAGTATCGC---TTTCCGGGCCTACCCTCCG 127681 | || ||||| | ||| || ||||| ||||| ||| ||| ||| |||||||| Sbjct 58659 CAATCTTGTCGATGACCTCATTGCCACCGTAGTAGCGCGCATTT---GGCAGACCCTCCG 58715 Query 127682 AGTACTTGTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAGTTTT 127741 ||||||||| |||| || |||| || ||| || ||| | | | |||||||| | Sbjct 58716 CGTACTTGTTCGTGAGGCATGAACCCAAGCAATCCATCACGGCGCGCGAAGTAAAGTTCT 58775 Query 127742 CCGATGCGAT 127751 | || || || Sbjct 58776 CGGAAGCAAT 58785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741041757319080