Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq157 93.3 3e-14 >seq157 Length=157498 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || ||||| || |||||||| ||||| | | | | ||||||| || || Sbjct 62108 TGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAAGTACGTCCGTCTTCCAACTGC 62167 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| | || | |||||| ||||| ||||||||||| ||||| ||| || Sbjct 62168 TTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTC 62227 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || || | ||| | |||||||| | || || || || || ||| Sbjct 62228 TGCTTCACGTTGTCGATCGAGTCGGAAGGCTCTACATCGAGAGTTATAGTCTTCCCCGTC 62287 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 | || || || || || |||||| Sbjct 62288 AACGTCTTGACGAAGATCTGCATA 62311 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || || || || |||||||| ||||| ||| | | |||| || || || Sbjct 62336 TGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGTCCGTCCTCCAACTGC 62395 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| | || | |||||| ||||| |||||||||||| ||||| ||| || Sbjct 62396 TTGCCAGCAAAGATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGAATCTTC 62455 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || || | || | ||||| || | || || || || || ||| Sbjct 62456 TGCTTCACGTTATCGATCGAGTCAGAAGGCTCTACGTCGAGAGTTATAGTCTTTCCCGTC 62515 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 | ||| || || ||||| |||||| Sbjct 62516 AAAGTCTTGACGAAAATCTGCATA 62539 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || ||||| || |||||||| ||||| ||| | | |||| || || || Sbjct 62792 TGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTCCAACTGC 62851 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| | || | |||||| ||||| ||||||||||| ||||| ||| || Sbjct 62852 TTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTC 62911 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || || | || | || || || | || || || || || ||| Sbjct 62912 TGCTTCACGTTATCGATCGAGTCAGAAGGCTCAACGTCAAGAGTGATTGTCTTTCCCGTC 62971 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 | ||| || || ||||| |||||| Sbjct 62972 AAAGTCTTGACGAAAATCTGCATA 62995 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || ||||| || ||||| || ||||| | | | |||| || || || Sbjct 63020 TGGAGGGTCGACTCTTTCTGAATGTTATAGTCGCTCAACGTACGACCGTCCTCCAACTGC 63079 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| || | || | |||||| ||||| ||||||||||| ||||| ||| || Sbjct 63080 TTGCCGGCAAAGATTAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTC 63139 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || || | ||| | || ||||| | || || || || || ||| Sbjct 63140 TGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACATCAAGAGTGATTGTCTTTCCCGTC 63199 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || ||||||||||| ||||| Sbjct 63200 AGCGTCTTTACAAAAATCTGCAT 63222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362170888326903