Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1 170 2e-37 >seq1 Length=763219 Score = 170 bits (188), Expect = 2e-37 Identities = 372/549 (68%), Gaps = 6/549 (1%) Strand=Plus/Plus Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 || ||||| || ||||| || || || | || || |||||||||||||| ||||| Sbjct 607180 CACGCAAAGTCCGTGTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAGA 607239 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCCGaaaaaaa 13269 || ||||| | || || || || | |||||| || | |||| || || || || ||||| Sbjct 607240 CCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGATGG-AGCAGAATGAGCCAGAGAAAAA 607298 Query 13270 TATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTC 13329 || ||||||||||| ||||| || | | || ||| ||| | | || Sbjct 607299 AATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTGGATC 607358 Query 13330 TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTT 13389 |||||| ||||||| ||||||| | ||||| ||| | || || || Sbjct 607359 GCACCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCACG 607418 Query 13390 AAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTA-TACA 13448 | || || | || || | |||| |||||| || || ||||| |||| | |||| Sbjct 607419 TAGTAGATGGTCCTTCTCAATCGCGTCTTTAATATACGTGTCAATCAA-AAGCGAGTACA 607477 Query 13449 TTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATA 13508 ||| || || ||||| || || || ||||| || || ||||| || | |||||||| | Sbjct 607478 CTTCCGAGTGTATATTCTCGATTGCGATTTGAAACCCGTAAAAGCAGCGAGCCTCTGGCA 607537 Query 13509 CCTGAACTTCGGAG-TAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCA 13567 |||| |||||| | |||||| | |||| ||||| || || || |||||||||||| Sbjct 607538 CCTGCACTTCGTTGCTAAAATTCATG-GCTAGATTTTCATTCACAATGCCGTCACTAGCA 607596 Query 13568 GCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAA 13627 ||||| ||||| || | |||||||| || | ||||| || | | | |||| Sbjct 607597 GCAAAGAAAGCGAGCACATGCTTAATGAAATAACGCTCGTTGTCCGTGAGGCTAGCCCAA 607656 Query 13628 TCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTC 13687 ||| | ||| | | ||| | |||||| | |||||||||||||| |||| ||| Sbjct 607657 TCTTTCAGATCGTGCACCAGATCGAGTTCCTCAGCTGTCCAAAAAGAAGCTTCAGCTTTC 607716 Query 13688 TTATACATC 13696 || |||||| Sbjct 607717 TTGTACATC 607725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430972509357966