Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq55 122 2e-22 seq157 113 1e-19 >seq55 Length=263441 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||||||||| ||||| | | ||| | || ||||| || || || ||| Sbjct 150845 GTCGATTCTTTCTGAATATTGTAGTCCGCCAAAGTCCGGCCATCTTCGAGCTGCTTGCCA 150904 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || || ||||| || |||||||| || ||| Sbjct 150905 GCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTTGTCCTGAATTTTCTGTTTG 150964 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | | |||| || || || || || ||||| ||||| || || || || Sbjct 150965 ACATTGTCAATGCTATCCGAGGGCTCCACGTCCAGCGTAATGGTCTTGCCCGTCAGGGTC 151024 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || ||||||||||| Sbjct 151025 TTGACGAAAATCTGCATTTT 151044 >seq157 Length=157498 Score = 113 bits (124), Expect = 1e-19 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| |||||||| | || | |||||| || | || || || Sbjct 63026 GTCGACTCTTTCTGAATGTTATAGTCGCTCAACGTACGACCGTCCTCCAACTGCTTGCCG 63085 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 ||||| ||||| | || || ||||| || |||||||| || ||||||||||| ||| || Sbjct 63086 GCAAAGATTAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTCTGC-TT 63144 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | | ||| ||| || || || || || || ||||| || || || || Sbjct 63145 CACGTTGTCGATCGAGTCGGAAGGCTCAACATCAAGAGTGATTGTCTTTCCCGTCAGCGT 63204 Query 104542 TTTTACAAATATCTGCATT 104560 |||||||| ||||||||| Sbjct 63205 CTTTACAAAAATCTGCATT 63223 Score = 107 bits (118), Expect = 4e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || ||||| | ||| | |||||||| | || || ||| Sbjct 62114 GTCGACTCTTTCTGGATGTTGTAGTCGCTCAAAGTACGTCCGTCTTCCAACTGCTTGCCA 62173 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 |||||||| || | || || ||||| || |||||||| || ||||||||||| ||| || Sbjct 62174 GCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTCTGC-TT 62232 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | | ||| ||| ||||| || || || |||||||| || || | || Sbjct 62233 CACGTTGTCGATCGAGTCGGAAGGCTCTACATCGAGAGTTATAGTCTTCCCCGTCAACGT 62292 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 62293 CTTGACGAAGATCTGCAT 62310 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || |||||| | ||| | ||||| || | || || ||| Sbjct 62570 GTCGACTCCTTCTGGATGTTGTAGTCACTCAAAGTACGTCCGTCCTCCAACTGCTTGCCA 62629 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 ||||| ||||| | || |||||||| || |||||||| || ||||||||||| ||| || Sbjct 62630 GCAAAGATTAGACGTTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGAATCTTCTGC-TT 62688 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | | ||| ||| || || || || || |||||||| || || | || Sbjct 62689 CACGTTGTCGATCGAGTCGGAAGGCTCCACATCGAGAGTTATAGTCTTTCCCGTCAAAGT 62748 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 62749 CTTGACGAAAATCTGCAT 62766 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| ||||| | ||||| || | || || ||| Sbjct 62342 GTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGTCCGTCCTCCAACTGCTTGCCA 62401 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 ||||| ||||| | || || ||||| || |||||||| || ||||||||||| ||| || Sbjct 62402 GCAAAGATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGAATCTTCTGC-TT 62460 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | | || ||| ||||| || || || |||||||| || || | || Sbjct 62461 CACGTTATCGATCGAGTCAGAAGGCTCTACGTCGAGAGTTATAGTCTTTCCCGTCAAAGT 62520 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 62521 CTTGACGAAAATCTGCAT 62538 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || ||||| ||||| | ||||| || | || || ||| Sbjct 62798 GTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTCCAACTGCTTGCCA 62857 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 |||||||| || | || || ||||| || |||||||| || ||||||||||| ||| || Sbjct 62858 GCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTCTGC-TT 62916 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | | || ||| || || || || || || ||||| || || | || Sbjct 62917 CACGTTATCGATCGAGTCAGAAGGCTCAACGTCAAGAGTGATTGTCTTTCCCGTCAAAGT 62976 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 62977 CTTGACGAAAATCTGCAT 62994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151370621434164