Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq193 140 5e-29 seq100 116 6e-22 >seq193 Length=137484 Score = 140 bits (154), Expect = 5e-29 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| |||||| || || |||||||| ||||| || || ||||| Sbjct 107467 GCCAAGCGTCATCGCAAGGTTCTTCGCGACAATATCCAAGGTATCACTAAACCTGCTATT 107408 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| |||||||||||||| || ||||| | ||||| | | || ||||| | Sbjct 107407 CGCCGTCTTGCTCGTCGTGGTGGTGTTAAGCGCATTTCTGGGCTCATTTACGAAGAAACG 107348 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||||||||| |||| || | | ||| || | || || || || || ||| Sbjct 107347 CGAGGTGTTTTGAAGGTCTTTCTTGAAAACGTGATTCGCGACTCTGTCACGTACACTGAG 107288 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||| || ||||||| | || ||||| | || |||||||| Sbjct 107287 CACGCGCGCCGTAAAACTGTGACTGCCATGGACGTAGTATATGCCCTTAAGCGTCAAGGT 107228 Query 16673 CG 16674 || Sbjct 107227 CG 107226 >seq100 Length=209222 Score = 116 bits (128), Expect = 6e-22 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | |||||| || |||||||| || || || ||||| ||||| Sbjct 51120 GCAAAGCGTCATCGCAAAGTTCTTCGTGACAACATCCAGGGTATTACAAAGCCTGCTATT 51179 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || |||||||| || ||||||||| |||| || | |||| || || | | Sbjct 51180 CGTCGTCTAGCACGTCGTGGCGGTGTCAAGCGTATCTCCGGTCTCATCTACGAGGAAACT 51239 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| |||| |||| || | | ||| || | || || | ||||| ||| Sbjct 51240 CGCGGTGTCCTGAAAGTCTTTCTTGAAAACGTCATTCGCGACTCTGTGACTTATACGGAG 51299 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || || || || || | ||||| |||| || || | || ||||| || Sbjct 51300 CATGCCCGTCGCAAAACCGTGACGGCAATGGACGTCGTGTACGCCCTTAAGCGTCAGGGT 51359 Query 16673 CG 16674 || Sbjct 51360 CG 51361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073478359919