Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4 304 3e-77 seq154 149 2e-30 seq1 122 2e-22 >seq4 Length=584709 Score = 304 bits (336), Expect = 3e-77 Identities = 733/1101 (67%), Gaps = 14/1101 (1%) Strand=Plus/Plus Query 363418 TACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTT 363477 ||||| | |||| ||||||| | | || || || ||||| || ||| | | ||||| Sbjct 119168 TACCTCTTTCGTGTCAATGGCAAAGTCGTCGAGCGTCCGCAACAGATGCTTCTCCGTGTG 119227 Query 363478 GCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGT 363537 || | || ||||| | || | | |||||| |||| || ||| |||| | || Sbjct 119228 GCATTGGGCATCCACAAGCACGACATCAAGGCCGCGCTTGAGACGTATGAGCTCAT--GT 119285 Query 363538 GCTCGTGTATTC---ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCA 363594 | | |||| || ||||| || || || | | || || || |||| | |||| Sbjct 119286 -CGCAGAAATTCTTTACCCACGCGACACCGACGCTCTTTAACGCAGGCACTCCTCGTCCA 119344 Query 363595 CAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGAC 363654 ||| | || || |||||||| | ||| | || || || || || || || | |||| Sbjct 119345 CAGCTCTCGTCGTGCTTTCTCTTGGCCATGCAAGATGACTCGATTGAAGGCATTTATGAC 119404 Query 363655 ACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCAC 363714 || || ||| | ||||| ||||| || || ||||| || || | || ||| Sbjct 119405 ACGCTCAAGCAATGTGCGTGCATTTCGAAATGGGCCGGCGGGATCGGGATCAGTATGCAC 119464 Query 363715 AATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTT 363774 || ||||||| ||||| ||||| || ||||| || | |||||||| | || Sbjct 119465 AACATTCGTGCCACCAACAGCTACATCCGAGGCACGAACGGGTCGTCGAATGGCATCATT 119524 Query 363775 CCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGC 363834 || ||| | || || || | | || ||| ||||||| || || ||||| || |||||| Sbjct 119525 CCAATGTTGCGCGTCTTCAATGACACGGCGCGGTACGTTGATCAAGGTGGTGGGAAGCGC 119584 Query 363835 AAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAG 363894 ||||| ||||||| || ||||| ||||| || |||||| | ||||||||||| ||| Sbjct 119585 AAAGGCTCGTTTGCCATCTATCTAGAGCCCTGGCACGCCGATGTGTTTGAGTTTCTAGAG 119644 Query 363895 CTCCGGAAAAA-CACGGGAA-AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTT 363952 | |||||||| ||||| || || | || ||||| || ||| |||| | ||| | | Sbjct 119645 TTGCGGAAAAACCACGGCAACGAGTTGCAT--CGTGCTCGGGATTTGTTTTTTGCCTTGT 119702 Query 363953 GGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCC 364012 |||| | || | ||||||||||||||||| || | | ||| |||||||| | Sbjct 119703 GGGTCCCGGATCTCTTTATGAAGCGCGTGGAAGCCAATGGCACGTGGAGTCTCTTTTGTC 119762 Query 364013 CACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAA 364072 | ||||| || ||||| | ||| |||||||||| | || || | |||| Sbjct 119763 CCAACGAAGCGCCGGGTCTGTACGAACGTTGGGGTGACGCGTTTGAGGCCTTGTACGTCC 119822 Query 364073 AGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCA 364132 |||| ||| ||| || || || ||||| || || ||| | ||||||||||| | Sbjct 119823 AGTACGAACAGGAAGGCCGTGCCCGCAAGACGATCAATGCGCAGCAACTATGGTTTGCGA 119882 Query 364133 TCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACC 364192 || | || | ||||||||||| || || || ||| | || ||||| | |||| Sbjct 119883 TCCTCGACGCTCAGATTGAGACGGGCGTCCCTTACATGCTCTATAAAGACGCCGCGAACC 119942 Query 364193 GCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGA--T 364250 |||| || |||||||| ||||||| || || | ||| || | ||| | | || | Sbjct 119943 GCAAATCGAACCAGCAAAACCTTGGCACGATCCGATCGAGTAA--TTTGTGCTGTGAAGT 120000 Query 364251 TATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCC 364310 || ||||| || || | ||||| ||||| || ||| | |||||| | || | || Sbjct 120001 GATGGAATATACGTCTTCGGACGAAGTGGCCGTGTGCAACTTGGCGTCGGTGGCCTTGCC 120060 Query 364311 GGCGTTTGTAAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGC 364370 |||||| |||| || |||||| ||| | | || || ||||| | | | Sbjct 120061 CAAGTTTGTGCAAGACGGGGTCTTTGACTACCGGAAACTCTACGACGTGGTCAAAGTGGT 120120 Query 364371 TACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCG 364430 || |||| | ||||||| || ||| || || |||||| | || |||||| | Sbjct 120121 GACGCGCAACTTAAACAAGGTCATTGACGTCAACTACTATCCAGTGCCAGAAGCCCAAAC 120180 Query 364431 TTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT 364490 || |||||||| || |||||| | || |||| || ||||| | ||||| | |||||| Sbjct 120181 GTCCAATATGCGCCACCGCCCGGTCGGCATTGGCGTGCAGGGATTGGCTGATGCTTTTAT 120240 Query 364491 GATGCTCAAGATGGCATTTGA 364511 | | || | |||||||| Sbjct 120241 TCTCATGAATTTTGCATTTGA 120261 >seq154 Length=161528 Score = 149 bits (164), Expect = 2e-30 Identities = 396/592 (67%), Gaps = 20/592 (3%) Strand=Plus/Plus Query 111360 GAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACT-TGCAG-CAAAAA 111417 ||||| | |||||||| || ||||| ||||| ||| | ||| | ||| |||| Sbjct 91794 GAAGAGTTACTGTGGTTCATAAGCGGAGATACAAGTGCTCA--AACGCTACAGGCAAAGG 91851 Query 111418 ATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCG 111477 || | | || |||||||| |||||||||||||| | ||| ||| ||| | | | Sbjct 91852 ATATTCACATATGGGATGGTAATGGATCACGTGAGTATCTGGAT--AGTCGAG---GCCT 91906 Query 111478 ACAA-----CGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGG 111532 |||| ||||| || || || ||||| || ||||| ||||||||||| |||||||| Sbjct 91907 ACAAAGCCGCGAAGTTGGGGACCTTGGACCGGTATACGGCTTTCAATGGCGTCACTTTGG 91966 Query 111533 TGCAGACTACAAAACCATGCACGACTCA-TATGATTCACAGGGAACTGATCAA-TTACAG 111590 || | || | | |||||| | || | || | || || |||||| || ||| Sbjct 91967 AGCCAAGTATACGAACATGCATG-CTGACTACACTGGCCAAGGCGTTGATCAGCTTGCAG 92025 Query 111591 AATGTCATTGATCAAATTAAGAAC-AACCCAACTTCTCGTCGCATTATTATGAGTGCATG 111649 | || || || || | |||| || ||||| || || ||| || || ||||| Sbjct 92026 AG-GTAATCGAA-AAGCTGCGAACGAATCCAACGGACCGACGGATTGTTTTGTCGGCATG 92083 Query 111650 GAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTA 111709 ||| ||| | || | ||||||||||||| || || || | | ||||| || || Sbjct 92084 GAATCCAGCCGATTTAAACGAAATGGCACTTCCTCCTTGCCACATGTTTTGCCAATTCTA 92143 Query 111710 TGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGG 111769 ||| | || | | || || |||||||| ||||| || || || || || ||||| Sbjct 92144 TGTGGCAAATGGAGAGTTGTCGTGTCAAATGTACCAGCGCTCGGCCGACATGGGACTTGG 92203 Query 111770 TGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAA 111829 ||| ||||||||||| || || |||||||| || || | | | ||||| | || Sbjct 92204 TGTGCCGTTTAATATCGCTAGCTACGCACTGCTGACACGTCTTGTTGCTCAAGTGACTGG 92263 Query 111830 TCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACAT 111889 ||||| || || ||||| || ||||| || || ||||| || || || ||| ||| | Sbjct 92264 GCTCAAGCCTGGCGAATTTATCCACGTCATTGGCGATGCACACGTGTATTTAAATCACGT 92323 Query 111890 TGATGCACTTAAAACACAGTTGAAGCGCAAACCATACGATTTCCCAACGATT 111941 | |||| | | ||| ||| ||| | ||| | ||||||||| || Sbjct 92324 GGTGCCACTACAGAAACAACTGACGCGTACCCCACGCCCATTCCCAACGCTT 92375 >seq1 Length=763219 Score = 122 bits (134), Expect = 2e-22 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 ||||| ||| | || ||||||| |||||||||||||| || ||||| |||| || | Sbjct 607334 GAACGGCTTTTGGCCTTTGCTGCAGTTGAAGGCATTTTTTTCTCTGGCTCATTCTGCTCC 607275 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 ||||||||||| || || || | | ||||| ||||||| |||||||| ||| | ||| Sbjct 607274 ATCTTTTGGCTCAAGAAGCGCGGTTTAATGCCTGGTCTAAGCTTTTCAAACGAGCTTATT 607215 Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 ||||| || |||||| | || || || |||||||| Sbjct 607214 AGCCGGGACGAGGGTATGCACACGGACTTTGCGTG 607180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303322155372506