Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4 143 3e-29 seq157 131 2e-25 seq55 113 4e-20 seq593 93.3 4e-14 seq43 93.3 4e-14 >seq4 Length=584709 Score = 143 bits (158), Expect = 3e-29 Identities = 179/245 (73%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 145052 TACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTG 145111 |||| || |||| | ||||||||| ||||| || || || |||| ||| ||||| Sbjct 120624 TACTTGTTTACGATCGTAAACTCGCCAGCCAAGACGCGGCGATTGTACATGTTGGACGTA 120565 Query 145112 AAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTAC 145171 ||||| |||| || ||||| ||||||| |||||||||||||| || ||||||||| | Sbjct 120564 AAGGGCTCAATCGATTCGTTGTTGCCCAAGATTTGAGCGGTCGACGCCGTGGGCATGGGC 120505 Query 145172 GCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAA 145231 || ||||| | || || || || || |||| | ||| | |||||| || | ||||| Sbjct 120504 GCGACCAAGAGCGAGTTCCGGAGCCCATGCTGCATGACCTTTTCCTTCAGTGCCGCCCAA 120445 Query 145232 TCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTG 145288 ||||| || ||| | |||| | ||| |||||||||| | || || || || | || Sbjct 120444 TCCCAGAGGCCCGATGACGGCGTGACGCCCCACATGTCAAATTGAAAGATCCCTTGACTC 120385 Query 145289 GCGGG 145293 ||||| Sbjct 120384 GCGGG 120380 Score = 102 bits (112), Expect = 8e-17 Identities = 523/815 (64%), Gaps = 27/815 (3%) Strand=Plus/Minus Query 145687 GCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGC 145746 ||||||||| || || ||| || || || |||||||| || ||| | ||| || Sbjct 119992 GCACAAATTACTCGATCGGATCGTGCCAAGGTTTTGCTGGTTCGATTTGCGGTTCGCGGC 119933 Query 145747 GTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGG 145804 ||| || ||||||||||| || |||| ||||| | ||| | || | ||| |||| Sbjct 119932 GTCTTTATAGAGCATGTAAGGGACGCCCGTCTCAATCTGAGCGTCGAGGATCGCAAACCA 119873 Query 145805 TGCAAGTCCTGCGCA-CGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTA 145863 | | | ||||||| | | | ||| || | ||||| || | |||||| | ||| Sbjct 119872 T--AGTTGCTGCGCATTGATCGTCTTGCGGGCA-CGGCCTTCCTGTTCGTACTGGACGTA 119816 Query 145864 GAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTT-GTTGGGACACA 145922 | ||||||||||| ||| | | ||| |||| || || | ||| ||||||||| | Sbjct 119815 CAAGGCCTCAAACGCGTCACCCCAACGTTCGTACAGACCCGG-CGCTTCGTTGGGACAAA 119757 Query 145923 TCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCG 145982 || ||| ||| ||||| | ||||||| |||||| | ||| || ||||||| | Sbjct 119756 AGAGACTCCACGTGCCATTGGCTTCCACGCGCTTCATAAAGAGATCCGGGACCCACAAGG 119697 Query 145983 CGTACATCAAGT--CGCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAG 146040 | | | ||| | || || | ||||| ||| || |||| | ||| | || Sbjct 119696 CAAAAAACAAATCCCGAGCACGATGCAA--CTCGTTGCCGTGGTTTTTCCGCAACTCTAG 119639 Query 146041 CACACT-ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTT 146099 | ||| | | | || |||||||| || || | ||||| ||| | | ||||| || | Sbjct 119638 -AAACTCAAACACATCGGCGTGCCAGGGCTCTAGATAGATGGCAAACGAGCCTTTGCGCT 119580 Query 146100 T---GCCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGA 146156 | ||||| || || |||| || || ||| || |||||||||| ||| || || Sbjct 119579 TCCCACCACCTTGATCAACGTACCGCGCCGTGTCATTGAAGACGCGCAACATTGGAATGA 119520 Query 146157 CGCCGCT-GGCTACGCCGTTCG----TAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCA 146211 ||| | | | || ||||||| | | | || ||| || | || | || | | Sbjct 119519 TGCCATTCGACGAC-CCGTTCGTGCCTCGGATGTA-GCTGTTG--GTGGCA-CGAATGTT 119465 Query 146212 ATGAACATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGT 146271 || | | | | |||| |||||| | | || || || || || | |||||| Sbjct 119464 GTGCATACTGATCCCGATCCCGCCGGCCCATTTCGAAATGCACGCACATTGCTTGAGCGT 119405 Query 146272 CTCGTAGATGCCGTCAATGCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTG 146331 || || ||||| ||||| || | | ||| | | ||||||||||| | | ||| Sbjct 119404 GTCATAAATGCCTTCAATCGAGTCATCTTGCATGGCCAAGAGAAAGCACGACGAGAGCTG 119345 Query 146332 CGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCT 146391 | || || || || || | |||||| ||||||| ||||| | ||| | Sbjct 119344 TGGACGAGGAGTGCCTGCGTTAAAGAGCGTCGGTGTCGCGTGGGTAAAGAATTTCTGCGA 119285 Query 146392 CATCATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGAC 146451 ||| | | |||||| || | ||| | | ||||||| || |||||||| || || Sbjct 119284 CATGAGCTCATACGTCTCAAGCGCGGCCTTGATGTCGTGCTTGTGGATGCCCAATGCCAC 119225 Query 146452 GCGCATGAGCATGTGTTGGGGCCGCTCCGCCACTT 146486 || | ||||| ||||| || ||||| | |||| Sbjct 119224 ACGGAGAAGCATCTGTTGCGGACGCTCGACGACTT 119190 >seq157 Length=157498 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||||| ||| | || | |||||||||||| || |||||||| |||||| Sbjct 62312 CCTCCACGCAGACGCAACACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTC 62371 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| | ||||||||| || |||||| ||| |||||||| || || Sbjct 62372 AGAGTACGTCCGTCCTCCAACTGCTTGCCAGCAAAGATTAGACGTTGCTGGTCAGGTGGA 62431 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| || |||||||| | | || | | || | | ||| | | Sbjct 62432 ATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCTACG 62491 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || || || | ||| || |||||||||||||| Sbjct 62492 TCGAGAGTTATAGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62538 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||||| ||| | || | |||||||||||| || |||||||| || ||| Sbjct 62540 CCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCACTC 62599 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| | ||||||||| || |||||| ||| ||||| || || || Sbjct 62600 AAAGTACGTCCGTCCTCCAACTGCTTGCCAGCAAAGATTAGACGTTGCTGATCAGGGGGA 62659 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| || |||||||| | | || | | |||| | ||| | Sbjct 62660 ATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCCACA 62719 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 |||| || | || || || || | ||| || ||||||||||||||| || Sbjct 62720 TCGAGAGTTATAGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATGCCT 62770 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||||| ||| | || | ||||||||| || |||||||| || |||||| Sbjct 62996 CCGCCACGCAGACGCAACACAAGGTGGAGGGTCGACTCTTTCTGAATGTTATAGTCGCTC 63055 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| | ||||||||| || |||||| ||| |||||||| || || Sbjct 63056 AACGTACGACCGTCCTCCAACTGCTTGCCGGCAAAGATTAGACGTTGCTGGTCAGGGGGA 63115 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| || |||||||| | | || | | |||| | ||| | Sbjct 63116 ATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACA 63175 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || || || ||||| ||||||||||| Sbjct 63176 TCAAGAGTGATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCAT 63222 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| |||| ||| | || | ||||||||| || || |||||||| ||||| Sbjct 62767 GCCTCCACGCAGGCGCAACACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCT 62826 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || |||||| | ||||||||| || | || | ||| |||||||| || || Sbjct 62827 CAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGG 62886 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| ||||| || |||||||| | | || | | || | | ||| | Sbjct 62887 AATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCAAC 62946 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| | || | || || || || | ||| || |||||||||||||| Sbjct 62947 GTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62994 >seq55 Length=263441 Score = 113 bits (124), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 131007 GCCACCGC---GCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC 131063 |||||||| ||| ||||| ||| | || | ||||| || || ||||| ||||| || Sbjct 150811 GCCACCGCCACGCAGACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTC 150870 Query 131064 GCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGG 131123 || || || || || ||||||||||| || |||| | |||||||||||| || Sbjct 150871 CGCCAAAGTCCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGG 150930 Query 131124 AGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTC 131183 || || ||||| ||||| |||||||| |||| | || | |||| | || ||| Sbjct 150931 TGGAATCCCTTCCTTGTCCTGAATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTC 150990 Query 131184 GATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | ||| | |||| ||| || || || || || || |||||||||||||| Sbjct 150991 CACGTCCAGCGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 151041 >seq593 Length=12966 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATG-GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 |||||||||||||||| || | || | | || || || || |||||||| || || Sbjct 9108 CCTTTTGAATGTTGTAGTC-CGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAG 9166 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC 131163 || |||||||||||||| || || || ||||| ||||| |||||||||||| | | Sbjct 9167 ATCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTG 9226 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | | || | | || | ||| | |||| ||| || || || | ||||| || Sbjct 9227 TCAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTTTTGACA 9286 Query 131224 AAAATCTGCATGA 131236 ||||||||||||| Sbjct 9287 AAAATCTGCATGA 9299 >seq43 Length=290853 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATG-GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 |||||||||||||||| || | || | | || || || || |||||||| || || Sbjct 97873 CCTTTTGAATGTTGTAGTC-CGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAG 97931 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC 131163 || |||||||||||||| || || || ||||| ||||| |||||||||||| | | Sbjct 97932 ATCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTG 97991 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | | || | | || | ||| | |||| ||| || || || | || || || Sbjct 97992 TCAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACA 98051 Query 131224 AAAATCTGCATGACT 131238 ||||||||||||||| Sbjct 98052 AAAATCTGCATGACT 98066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472001689998720