Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1 239 6e-58 seq4 118 1e-21 >seq1 Length=763219 Score = 239 bits (264), Expect = 6e-58 Identities = 408/584 (70%), Gaps = 7/584 (1%) Strand=Plus/Plus Query 32675 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 32734 ||| | ||||||||| | ||||| | ||||| ||||| | || || ||||||| || Sbjct 607194 GTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTTAGACCAGGCATTAAACC 607253 Query 32735 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTG 32793 ||||| || |||||||| ||||| ||| ||||| ||||| || ||||| ||||| |||| Sbjct 607254 GCGCTTCTTGAGCCAAAAGATGGA-GCAGAATGAGCCAGAGAAAAAAATGCCTTCAACTG 607312 Query 32794 CCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTC-ATGTATCCACTTTTGAG 32850 | |||||||| | ||| | ||| ||| | | | || || |||||| ||| Sbjct 607313 CAGCAAAGGCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTGGATCGCACCACTTCAGAG 607372 Query 32851 CCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttt 32910 |||| | || || || | || ||||| || ||||| |||||| | |||| || | Sbjct 607373 CCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGCACGTAGTAGATGGTCCT 607432 Query 32911 tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 32970 | ||| | ||||||| ||| || ||||||||||| |||| |||||| || || | Sbjct 607433 TCTCAATCGCGTCTTTAATATACGTGTCAATCAAAAGCGAGTACACTTCCGAGTGTATAT 607492 Query 32971 TTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTAC 33030 | || || || |||||||| ||||| ||||| | |||||| | | ||| ||||| | | Sbjct 607493 TCTCGATTGCGATTTGAAACCCGTAAAAGCAGCGAGCCTCTGGCACCTGCACTTCGTTGC 607552 Query 33031 -AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33089 ||||| | |||| |||||||||||| || |||||||| || ||||| || || | Sbjct 607553 TAAAATTCAT-GGCTAGATTTTCATTCACAATGCCGTCACTAGCAGCAAAGAAAGCGAGC 607611 Query 33090 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 33149 ||||| || || ||||| |||| || || || |||||| || | ||| | Sbjct 607612 ACATGCTTAATGAAATAACGCTCGTTGTCCGTGAGGCTAGCCCAATCTTTCAGATCGTGC 607671 Query 33150 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 33209 | ||| | ||| || |||||||||| || || || || || || ||||| | ||| Sbjct 607672 ACCAGATCGAGTTCCTCAGCTGTCCAAAAAGAAGCTTCAGCTTTCTTGTACATCTGCCAC 607731 Query 33210 ATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 33253 | || || | ||||| ||||| | ||||| | ||| | ||| Sbjct 607732 ACTTCGTGCTCCTGAATGGGAAAGAGCACAAAGCGATTGGAATT 607775 >seq4 Length=584709 Score = 118 bits (130), Expect = 1e-21 Identities = 772/1235 (63%), Gaps = 10/1235 (1%) Strand=Plus/Minus Query 62487 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATG 62546 ||||||| || ||||| ||||| || ||| | || | || |||| ||||||| Sbjct 120314 CGTAATAGATCGTTTCAAAGATTTTTCGATTCAAGTCGCGTGCGGATTGGCTCTCAAATG 120255 Query 62547 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62606 | |||| | ||||||||| || || || ||||| || || ||||| |||| || | | Sbjct 120254 CAAAATTCATGAGAATAAAAGCATCAGCCAATCCCTGCACGCCAATGCCGACCGGGCGGT 120195 Query 62607 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62666 | | | |||| || ||| |||||||| | ||||| || || | || || | || | Sbjct 120194 GGCGCATATTGGACGTTTGGGCTTCTGGCACTGGATAGTAGTTGACGTCAATGACCTTGT 120135 Query 62667 TGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62726 | | || | | ||||||||||| || | ||||| | | ||||| ||| | Sbjct 120134 TTAAGTTGCGCGTCACCACTTTGACCACGTCGTAGAGTTTCCGGTAGTCAAAGACCCCGT 120075 Query 62727 CTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 62786 || |||||| || ||| || || || |||| || || ||||| || || | | | Sbjct 120074 CTTGCACAAACTTGGGCAAGGCCACCGACGCCAAGTTGCACACGGCCACTTCGTCCGAAG 120015 Query 62787 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 62846 || ||||| || | ||| ||| | |||||| | ||| || || | ||||| | Sbjct 120014 ACGTATATTCCATCACTTCACAGCACAAATTACTCGATCGGATCGTGCCAAGGTTTTGCT 119955 Query 62847 GATTACTCTTTTTGTTACAC-GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 62905 | || | ||| | | | | || || ||||| || ||| | || || || |||||| Sbjct 119954 GGTT-CGATTTGCGGTTCGCGGCGTCTTTATAGAGCATGTAAGGGACGCCCGTCTCAATC 119896 Query 62906 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT--TATAGATTTGTATCTCT 62963 |||| || | ||||| ||| | | || || || | | | | | | Sbjct 119895 TGAGCGTCGAGGATCGCAAACCATAGTTGCTGCGCATTGATCGTCTTG-CGGGCACGGCC 119837 Query 62964 TTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTC 63023 || || |||||| | ||||| || ||| |||| |||||| | || ||| | Sbjct 119836 TTCCT-GTTCGTACTGGACGTACAAGGCCTCAAACGCGTCACCCCAACGTTCGTACAGAC 119778 Query 63024 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63083 | || ||| | ||||| | | |||| || | | | ||| || ||||||| Sbjct 119777 CCGGCGCTTCGTTGGGACAAAAGAGACTCCACGTGCCATTGGCTTCCACGCGCTTCATAA 119718 Query 63084 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63143 ||||||| || | ||| | || | ||| | ||| | | | ||| |||||| || Sbjct 119717 AGAGATCCGGGACCCACAAGGCAAAAAACAAATCCCGAGCACGATGCAACTCGTTGCCGT 119658 Query 63144 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63203 || || | || || ||| | | | ||| | ||||| || || | || |||| Sbjct 119657 GGTTTTTCCGCAACTCTAGAAACTCAAACACATCGGCGTGCCAGGGCTCTAGATAGATGG 119598 Query 63204 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63263 | | || || || || || ||||| | ||| | || |||| ||| | | Sbjct 119597 CAAACGAGCCTTTGCGCTTCCCACCACCTTGATCAACGTACCGCGCCGTGTCATTGAAGA 119538 Query 63264 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCAC 63323 | | |||||||||||| || ||||| || | || || || ||| ||| ||||| Sbjct 119537 CGCGCAACATTGGAATGATGCCATTCGACGACCCGTTCGTGCCTCGGATGTAGCTGTTGG 119478 Query 63324 TGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63381 |||||||||| | | | | |||| || || || || ||| ||| || || | || Sbjct 119477 TGGCACGAATGTTGTGCATACTGAT--CCCGATCCCGCCGGCCCATTTCGAAATGCACGC 119420 Query 63382 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 63441 ||| | || | ||| ||||| ||||| || || ||||| |||| | ||||| Sbjct 119419 ACATTGCTTGAGCGTGTCATAAATGCCTTCAATCGAGTCATCTTGCATGGCCAAGAGAAA 119360 Query 63442 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGT 63501 || || | || ||||| ||| || || ||||| | || || | ||||| || Sbjct 119359 GCACGACGAGAGCTGTGGACGAGGAGTGCCTGCGTTAAAGAGCGTCGGTGTCGCGTGGGT 119300 Query 63502 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63561 ||| |||| | || | || | |||||||||| || | | || || | || Sbjct 119299 AAAGAATTTCTGCGACATGAGCTCATACGTCTCAAGCGCGGCCTTGATGTCGTGCTTGTG 119240 Query 63562 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63621 || || | ||| ||||| | | ||| || || || | || |||| ||| || | Sbjct 119239 GATGCCCAATGCCACACGGAGAAGCATCTGTTGCGGACGCTCGACGACTTTGCCATTGAC 119180 Query 63622 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63681 || | ||| | || | |||||||| ||||| |||| |||| |||||| || Sbjct 119179 ACGAAAGAGGTACCCTCGCTCGAGCGTTTTAAACCCAAAGTAGTCGTATTCAAAGTCCCG 119120 Query 63682 TTCGTAAATAATAACCGAGTTGAGTTTATCCTTAT 63716 ||||| || || | || || || | || |||| Sbjct 119119 GTCGTATATGATGGCGGAATTCAGCTCGTCTTTAT 119085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633617085886800