Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq157 118 9e-22 seq55 118 9e-22 >seq157 Length=157498 Score = 118 bits (130), Expect = 9e-22 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || | ||||| | || || ||| | ||| Sbjct 62994 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACAATCACTCTTGACGTTGAGCCTTCT 62935 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| | ||||| | || ||||||| || || ||||| ||||| ||||| |||||||| Sbjct 62934 GACTCGATCGA-TAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGACCA 62876 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | |||||||| ||||| || || || || | || ||| || |||| ||||| Sbjct 62875 GCAACGTCTCATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGTACTCTGAGCGACTACAA 62816 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 62815 CATCCAGAAAGAGTCGACCCTTCA 62792 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || ||||||||||| |||| || || | ||||| | || || ||| | Sbjct 63225 ACAATGCAGATTTTTGTAAAGACGCTGACGGGAAAGACAATCACTCTTGATGTTGAGCCT 63166 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||| | ||||| ||||||| || || ||||| ||||| ||||| |||||| Sbjct 63165 TCCGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGAC 63106 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || ||||||||||| || || || || | ||| || || |||| || Sbjct 63105 CAGCAACGTCTAATCTTTGCCGGCAAGCAGTTGGAGGACGGTCGTACGTTGAGCGACTAT 63046 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 || ||||| ||||| || || || || Sbjct 63045 AACATTCAGAAAGAGTCGACCCTCCA 63020 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || | || || |||| || ||| | ||| Sbjct 62538 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACTATAACTCTCGACGTAGAGCCTTCT 62479 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| | ||||| | || ||||||| || || ||||| ||||| |||||||||||||| Sbjct 62478 GACTCGATCGA-TAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCACCTGACCA 62420 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || ||||| ||||| || || || || | || ||| || |||| ||||| Sbjct 62419 GCAACGTCTAATCTTTGCTGGCAAGCAGTTGGAGGACGGACGTACTCTGAGCGACTACAA 62360 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 62359 CATCCAGAAGGAGTCGACCCTCCA 62336 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || | || || |||| |||||| | || Sbjct 62766 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACTATAACTCTCGATGTGGAGCCTTCC 62707 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | ||||| ||||||| || || ||||| ||||| ||||| ||||| || Sbjct 62706 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAAGGAATTCCCCCTGATCAG 62647 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| ||||| || || || || | || ||| || | || ||||| Sbjct 62646 CAACGTCTAATCTTTGCTGGCAAGCAGTTGGAGGACGGACGTACTTTGAGTGACTACAAC 62587 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 62586 ATCCAGAAGGAGTCGACCCTTCA 62564 >seq55 Length=263441 Score = 118 bits (130), Expect = 9e-22 Identities = 151/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| |||| || || |||| || | || |||||| | || Sbjct 151042 AATGCAGATTTTCGTCAAGACCCTGACGGGCAAGACCATTACGCTGGACGTGGAGCCCTC 150983 Query 25058 TGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || | || || || || || || ||||| ||||| |||||||||||||| ||| Sbjct 150982 GGATAGCATTGA--CAATGTCAAACAGAAAATTCAGGACAAGGAAGGGATTCCACCCGAC 150925 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||| ||||| || | ||||||| || ||| ||| || ||| Sbjct 150924 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGGACTTTGGCGGACTAC 150865 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 |||||||| |||||||| ||||| || Sbjct 150864 AATATTCAGAAAGAATCGACGCTGCA 150839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433318055528645