Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1 178 1e-39 >seq1 Length=763219 Score = 178 bits (196), Expect = 1e-39 Identities = 408/608 (67%), Gaps = 16/608 (3%) Strand=Plus/Plus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||||| | |||||||||||| || || | ||| ||||| || || | ||| || Sbjct 607170 GTACAAAAGGCACGCAAAGTCCGTGTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGA 607229 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA-C 93200 || ||| ||| || | | || || |||||||||||||| || || ||| || | | Sbjct 607230 AAAGCTTAGACCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGATGGA-GCAGAATGAGC 607288 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 |||| ||||| || ||||| || || ||||| |||| || ||||| | | | || Sbjct 607289 CAGAGAAAAAAATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATA------GG 607342 Query 93261 AATTA--CTGCTGATC----CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTA 93314 || | | |||| || || | |||||| | |||||||| | | ||||| | Sbjct 607343 AAGAGACCCGTGGATCGCACCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGCAAGGGA 607402 Query 93315 GTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGA 93374 || |||||||| | ||| | || ||| || ||| || || || || | Sbjct 607403 TAGTCTCGATAGCACGTAGTAGATGGTCCTTCTCAATCGCGTCTTTAATATACGTGTCAA 607462 Query 93375 TTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAAC 93434 | || || || |||| ||| || || | |||||| ||||| ||||| || ||||| || | Sbjct 607463 TCAAAAGCGAGTACACTTCCGAGTGTATATTCTCGATTGCGATTTGAAACCCGTAAAAGC 607522 Query 93435 ATCTAGCTTCCGTGATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACT 93493 | | ||| || | | ||||||||| ||| ||||| || | ||||||||||| || Sbjct 607523 AGCGAGCCTCTGGCACCTGCACTTCGTTGCTAAAAT-TCATGGCTAGATTTTCATTCACA 607581 Query 93494 ATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCT 93553 || || || || ||||| ||||| | | |||||| || |||| ||| | || Sbjct 607582 ATGCCGTCACTAGCAGCAAAGAAAGCGAGCACATGCTTAATGAAATAACGCTCGTTGTCC 607641 Query 93554 TTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAAC 93613 | || || ||||||| ||||| | ||||||| ||| || | |||||||| Sbjct 607642 GTGAGGCTAGCCCAATCTTTCAGATCGTGCACCAGATCGAGTTCCTCAGCTGTCCAAAAA 607701 Query 93614 GATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACA 93673 || ||||| ||||| |||||||| | ||| | || || | ||||| ||||| | ||| Sbjct 607702 GAAGCTTCAGCTTTCTTGTACATCTGCCACACTTCGTGCTCCTGAATGGGAAAGAGCACA 607761 Query 93674 AAACGATT 93681 || ||||| Sbjct 607762 AAGCGATT 607769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556847692888920