Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq8 114 3e-20 seq182 102 2e-16 seq2 102 2e-16 seq163 93.3 9e-14 >seq8 Length=519435 Score = 114 bits (126), Expect = 3e-20 Identities = 245/362 (68%), Gaps = 7/362 (2%) Strand=Plus/Minus Query 218650 GAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGT 218709 || || || || || ||||| | ||||| || || || |||| |||||||||||| Sbjct 328657 GAGATCAAAGTGGCACAGTTGGCGGGTTACGTCTCTGAGCACTCTGCTTACCATCACGGT 328598 Query 218710 GAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAAC 218769 ||||||||| | ||||| ||||| ||||||||||||| ||| || || ||||| Sbjct 328597 GAGCAGAGTTTACAGGGATGTATTGTCAATATGGCACAGGACTTTGTTGGTAGCAACAAT 328538 Query 218770 ATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGT 218829 || | | ||| ||| | ||| || |||||| ||||| || |||| || ||||| Sbjct 328537 ATCCATCTTCTGTCCCCGATCGGCCAATTTGGTACTCGTTTAATGGGAGGCAAGGACGCG 328478 Query 218830 GCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATC-- 218887 || |||| | || || || || || || || |||| ||| | | | | ||| Sbjct 328477 GCCAGTGCCCGTTACATTTTCACTAACTTAGAGCAGCTGACACGCGTGATTTACGATCCT 328418 Query 218888 -AGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAG 218946 || | | ||| || | | |||||||| | || || ||| |||||||| ||||| Sbjct 328417 TCGGACAACGAT-TGTT--TGAAGTATCTGGTTGAGGACGGTCAATCGATTGAACCCGAA 328361 Query 218947 TGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGGG 219006 ||||| | || |||||| | |||| || || ||| | | ||||| || || ||| Sbjct 328360 TGGTACATTCCAATTATTCCCATGGTGCTTGTCAACGGTAGCGACGGTATTGGAAC-GGG 328302 Query 219007 TT 219008 || Sbjct 328301 TT 328300 >seq182 Length=140942 Score = 102 bits (112), Expect = 2e-16 Identities = 654/1031 (63%), Gaps = 55/1031 (5%) Strand=Plus/Plus Query 279350 GGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTAC 279409 ||| || ||| ||||||| ||||||||||| ||||| || | |||| | || ||| | | Sbjct 106351 GGACCTTTGTAACTGTGAGTTCTCGCTCGCTTATGGCGGTATGATTTTACTCAACAATGC 106410 Query 279410 CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAA 279469 ||| || | |||||||| | || || ||||| |||||| || || || || Sbjct 106411 CCGTCTTCGTCTAAAGCGTGGTCATCGTTACGGTCTGTGCGGTCCTAACGGTTGTGGCAA 106470 Query 279470 GAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCATCTGA 279529 | || || |||||||||||| | || |||||||| ||||| ||||||| | || Sbjct 106471 GTCGACCCTTATGCGCGCCATTTCGAATGGTCAGCTCGAAGGCTTTCCTAGCCGTGACGA 106530 Query 279530 GGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGTT 279589 | | | ||| || | ||| |||||| | | | | ||| | || |||| | Sbjct 106531 GCTCAAGACTGTATTTGTTGAGCACAATCTTCAAGCATCTGAGGCTGAATTGTCTGTCGT 106590 Query 279590 CGACTTCCTAACGTC-TGACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATCATCC 279648 || ||| | || | || || ||| | || ||| | | | |||| | | Sbjct 106591 TGATTTCAT----TCTTAACGATGAGGATTTGAAAAATACTCCACGCAAGGAGGT--TGA 106644 Query 279649 AGAAA------CTGGAGGCCAATGGTTTTGATGAAAGAATGCGTAATCTGCCAGTAGGTT 279702 ||| | |||| | ||| ||| | ||||| | | || || Sbjct 106645 AGATACTCTTTCTGGTG----TTGGATTTACTTCTGAAATGCAGGCCCAGGGTGTGGGCA 106700 Query 279703 CTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCG 279762 |||| || ||||||||||||||||| ||| || |||| ||||| | | | || | Sbjct 106701 CTCTTTCAGGTGGTTGGAAGATGAAATTGGAGCTAGCTCGTGCCATGTTGCAGAAGGCTG 106760 Query 279763 ATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAG 279822 | | |||| ||||||||||| || |||||| |||| || ||||| || ||| | | Sbjct 106761 ACATTTTACTACTTGATGAGCCGACGAACCACTTGGATGTCAAGAACGTTGCTTGGTTGG 106820 Query 279823 TGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCT 279882 || | || ||| || || || ||||| | || || || ||||||||| | | Sbjct 106821 AACAATATTTGACTAGTTTGCCAAACGTGACTTCCATTATGGTGTCGCACGACTCTAGTT 106880 Query 279883 TCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGA-----GCAAAATCTGAAGCTCTC 279937 |||| || | || || | ||||||||||||||| ||||| |||||| | | Sbjct 106881 TCCTTGACACTGTCTGTACCAACATCATTCACTATGAAACTCGCAAA--CTGAAGATTTA 106938 Query 279938 CAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTA 279997 |||| || || || || || || | || |||||||| |||||||| Sbjct 106939 CAAG------GGTAATCTCTCCAAGTTTGTCGAGCAGAAGCCTGAGGCCAAGGCCTACTA 106992 Query 279998 TGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCAT 280057 || || || | || || |||| | || || ||||| || || || | | || Sbjct 106993 CGAGCTCGAGTCGGACAACGTTAAGTTTGTCTTTCCCGAGCCTGGTTTCCTTGCTGATAT 107052 Query 280058 C-ACATCAAAGG---ATCGCGCAATC--ATGA--AGCT--CCGTGGC-GTCTCCTTTGCT 280106 | | | ||| || | || || || ||| | || ||| | || ||| || Sbjct 107053 CAAGAACAAGGGTAAACCGATCATTCGTCTGACCAACTGCTCGTACCAGTATCC-GGGCA 107111 Query 280107 TATCCCAATGGCCCCAAC-ATCTTCAGCAGTGTCAACTCGCAGGT-TTCTATGAACTCAC 280164 | ||||| ||| | ||| || || | || | || || || || | | | | Sbjct 107112 CA-CCCAA----ACCATCGATCAACAACA-TTTC-AGTCACATGTGCCCTGTCGAGT--C 107162 Query 280165 GGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTG 280224 | |||| || | || ||||| ||||| |||||||| || || || ||| | ||||| | Sbjct 107163 GTATTGCCGTGCTCGGTCCCAACGGTGCTGGTAAGTCGACGCTGATTAAAATGCTGACGG 107222 Query 280225 GCGAGACCCAGGCCACTGAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCTTAC 280283 | || || | || || |||| || ||||| || || |||||| | ||||| Sbjct 107223 GTGAAGTAGAGCCGAC-CAGTGGTCAGGTGTGGAAACACCCTTCCATGCGCTTTGCTTAT 107281 Query 280284 GTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATAC 280343 || |||||||| ||||| |||||||| ||| ||||| ||| |||| | ||||| || Sbjct 107282 GTGGCTCAGCATGCTTTTCACCACATTGAGTCGCACCTCGACGAGACTGCGAACCAGTAT 107341 Query 280344 ATTCAGTGGCG 280354 ||||||||||| Sbjct 107342 ATTCAGTGGCG 107352 >seq2 Length=690202 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 86061 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 86120 Query 142563 CCCCAC 142568 |||||| Sbjct 86121 CCCCAC 86126 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 142513 GCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| Sbjct 85770 GCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGATCCCCAC 85825 >seq163 Length=154122 Score = 93.3 bits (102), Expect = 9e-14 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| |||||||||||||||||||| |||||| |||||| ||||||||||||||||||| Sbjct 62792 CCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCCTAATCTTGTGGTCGTGGGTTCGAGCC 62733 Query 142565 CCAC 142568 |||| Sbjct 62732 CCAC 62729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027812002473603