Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq55 132 4e-26 seq593 123 2e-23 seq43 120 3e-22 seq157 113 4e-20 >seq55 Length=263441 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||||| || | ||| || | || | ||| |||||||| ||||| ||||| || Sbjct 150814 ACCGCCACGCAGACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCCGC 150873 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||| || |||||| || || || ||||| |||| |||||||| ||||| || || Sbjct 150874 CAAAGTCCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGG 150933 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||| || ||||| | | |||| | | || | || || || Sbjct 150934 AATCCCTTCCTTGTCCTGAATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCAC 150993 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || | || ||||| ||||| || || || ||||||||||| Sbjct 150994 GTCCAGCGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 151041 >seq593 Length=12966 Score = 123 bits (136), Expect = 2e-23 Identities = 144/191 (75%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 114195 TTTTGAATGTTGTAATCGCTCATAGT--ACGAGAATCTTCAAGTTGTTTACCAGCGTAGA 114252 |||||||||||||| || | || ||| ||| |||||||||||| || ||||| ||| Sbjct 9110 TTTTGAATGTTGTAGTC-CGCA-AGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 9167 Query 114253 TGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTT 114312 | | |||||| ||||| || ||||||||||| ||||| || || || |||| | | Sbjct 9168 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGT 9227 Query 114313 CAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 ||| | |||| | | ||| ||||||| || | || ||||| |||| ||||| |||| Sbjct 9228 CAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTTTTGACAA 9287 Query 114373 AAATCTGCATG 114383 ||||||||||| Sbjct 9288 AAATCTGCATG 9298 >seq43 Length=290853 Score = 120 bits (132), Expect = 3e-22 Identities = 145/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 114195 TTTTGAATGTTGTAATCGCTCATAGT--ACGAGAATCTTCAAGTTGTTTACCAGCGTAGA 114252 |||||||||||||| || | || ||| ||| |||||||||||| || ||||| ||| Sbjct 97875 TTTTGAATGTTGTAGTC-CGCA-AGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGA 97932 Query 114253 TGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTT 114312 | | |||||| ||||| || ||||||||||| ||||| || || || |||| | | Sbjct 97933 TCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGT 97992 Query 114313 CAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 ||| | |||| | | ||| ||||||| || | || ||||| |||| || || |||| Sbjct 97993 CAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACAA 98052 Query 114373 AAATCTGCATGGCT 114386 ||||||||||| || Sbjct 98053 AAATCTGCATGACT 98066 >seq157 Length=157498 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | ||| || | || | || || ||||| |||||||| || ||| Sbjct 62993 ATACCGCCACGCAGACGCAACACAAGGTGGAGGGTCGACTCTTTCTGAATGTTATAGTCG 63052 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| |||||| || || | || || || || |||| ||||| || ||||| || Sbjct 63053 CTCAACGTACGACCGTCCTCCAACTGCTTGCCGGCAAAGATTAGACGTTGCTGGTCAGGG 63112 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || || | | || | | ||||| | || Sbjct 63113 GGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCA 63172 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || ||||| || ||||||||||||||||| Sbjct 63173 ACATCAAGAGTGATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCAT 63222 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || | || | || || || || || |||||||| ||| Sbjct 62309 ATACCTCCACGCAGACGCAACACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCG 62368 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| |||||| || || | || || ||||| |||| ||||| || ||||| || Sbjct 62369 CTCAGAGTACGTCCGTCCTCCAACTGCTTGCCAGCAAAGATTAGACGTTGCTGGTCAGGT 62428 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || || | | || | | ||| | | || Sbjct 62429 GGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCT 62488 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| | || | || || || |||| ||| || || ||||||||||| Sbjct 62489 ACGTCGAGAGTTATAGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62538 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | ||| || | || | || || ||||| || |||||||| ||| Sbjct 62765 ATGCCTCCACGCAGGCGCAACACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCG 62824 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| |||||| || || | || || ||||| | |||||||| || ||||| || Sbjct 62825 CTCAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGG 62884 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || || | | || | | ||| | | || Sbjct 62885 GGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCA 62944 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| | || | || || || |||| ||| || || ||||||||||| Sbjct 62945 ACGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62994 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || | || | || || || || || |||||||| || Sbjct 62537 ATACCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCA 62596 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| |||||| || || | || || ||||| |||| ||||| || || || || Sbjct 62597 CTCAAAGTACGTCCGTCCTCCAACTGCTTGCCAGCAAAGATTAGACGTTGCTGATCAGGG 62656 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || || | | || | | ||||| | || Sbjct 62657 GGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCC 62716 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || | || | || || || |||| ||| || || |||||||||||| || Sbjct 62717 ACATCGAGAGTTATAGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATGCCT 62770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420124758309396