Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4 129 1e-24 >seq4 Length=584709 Score = 129 bits (142), Expect = 1e-24 Identities = 427/653 (65%), Gaps = 26/653 (4%) Strand=Plus/Minus Query 244484 TCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG-C 244542 || |||| |||||||||||| ||||||| || | ||| ||| | ||||| || ||| | Sbjct 120231 TCAGCCAATCCCTGCACGCCAATGCCGACCGGGCGGTGGCGCATATTGGA-CGTTTGGGC 120173 Query 244543 TTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCG 244602 ||| ||||| || || ||||| |||| || |||||||| | |||||| || | || Sbjct 120172 TTCTGGCACTGGATAGTAGTTGACGTCAATGACCTTGTTTAAGTTGCGCGTCACCACTTT 120113 Query 244603 GACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCT 244662 ||| |||||| || | | |||| | || || || | || Sbjct 120112 GACCACGTCGTAGAGTTTCCGGTAGTCAAA--------GACCC----CG-TCTTG----- 120071 Query 244663 CACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGT 244722 |||||||| | | ||| || |||| |||||| |||||||| || ||||| || Sbjct 120070 CACAAACTTGGGCAAGGCCACCGACGCCAAGTTGCACACGGCCACTTCGTCCGAAGACGT 120011 Query 244723 GTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATT 244782 || | | | || ||| | ||||| | ||| ||||| |||| || || || Sbjct 120010 ATATTCCATCACTTCACAGCACAAATTACTCGATCGGATCGTGCCAAGGTTTTGCTGGTT 119951 Query 244783 GGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG-AAGGGCCCCCCGGTCTCGAGCTGGG 244841 || ||| ||| |||||| || ||||||||| ||||| | |||| |||| | ||| | Sbjct 119950 CGATTTGCGGTTCGCGGCGTCTTTATAGAGCATGTAAGGGACGCCCG-TCTCAATCTGAG 119892 Query 244842 CGACGAGGA-CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCT 244900 || |||||| ||| ||| || | | || |||| |||| |||| || ||| || Sbjct 119891 CGTCGAGGATCGCAAA-CCATAGTTGCTGCGCATTGATCGTCTTGCGGGCACGGCCTTCC 119833 Query 244901 GCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGG 244960 ||||| || ||||| |||||| ||| || ||||| |||| || || || Sbjct 119832 TGTTCGTACTGGACGTACAAGGCCTCAAACGCGTCACCCCAACGTTCGTACAGACCCGG- 119774 Query 244961 CACGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAG 245019 | | || ||| || | |||||||||| ||| | | | || | || ||| ||||| Sbjct 119773 CGCTTCGTTGGGACAAAAGAGACTCCACGTGCCATTGGCTTCCACGCGCTTCATAAAGAG 119714 Query 245020 GTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTT 245079 || |||| ||| | ||| || | |||| | | ||| || ||| ||| Sbjct 119713 ATCCGGGACCCACAAGGCAAAAAACAAATCCCGAGCACGATGCAACTCGTTGCCGTGGTT 119654 Query 245080 CTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGA 245132 |||| || ||| | ||| ||||| || ||| ||||||||||||| | |||| Sbjct 119653 TTTCCGCAACTCTAGAAACTCAAACACATCGGCGTGCCAGGGCTCTAGATAGA 119601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944316972616080