Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq157 120 7e-22 seq55 113 1e-19 seq43 100 7e-16 seq593 96.9 8e-15 >seq157 Length=157498 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || |||||| | || ||||||||||| || || || || || || Sbjct 62120 TCTTTCTGGATGTTGTAGTCGCTCAAAGTACGTCCGTCTTCCAACTGCTTGCCAGCAAAA 62179 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| || || | || |||||||| || ||||| || ||| |||||||| Sbjct 62180 ATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTG 62239 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || ||| | ||||| ||||| || || |||||||| |||| ||||||||| Sbjct 62240 TCGATCGAGTCGGAAGGCTCTACATCGAGAGTTATAGTCTTCCCCGTCAACGTCTTGACG 62299 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 62300 AAGATCTGCAT 62310 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| || || |||||||| || || || || || || ||| Sbjct 62348 TCCTTCTGGATGTTGTAGTCGCTCAGAGTACGTCCGTCCTCCAACTGCTTGCCAGCAAAG 62407 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| || || | ||| |||||||| || ||||| || ||| |||||||| Sbjct 62408 ATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTA 62467 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || | ||||| ||||| || || ||||| || |||| |||||||||| Sbjct 62468 TCGATCGAGTCAGAAGGCTCTACGTCGAGAGTTATAGTCTTTCCCGTCAAAGTCTTGACG 62527 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 62528 AAAATCTGCAT 62538 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || |||||||| || || || || || || ||| Sbjct 62576 TCCTTCTGGATGTTGTAGTCACTCAAAGTACGTCCGTCCTCCAACTGCTTGCCAGCAAAG 62635 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| || ||| | || |||||||| || ||||| || ||| |||||||| Sbjct 62636 ATTAGACGTTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTG 62695 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || ||| | || || ||||| || || ||||| || |||| |||||||||| Sbjct 62696 TCGATCGAGTCGGAAGGCTCCACATCGAGAGTTATAGTCTTTCCCGTCAAAGTCTTGACG 62755 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 62756 AAAATCTGCAT 62766 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || |||||| || || || ||||| || || || || || || || Sbjct 62804 TCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAA 62863 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| || || | || |||||||| || ||||| || ||| |||||||| Sbjct 62864 ATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTA 62923 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || | || || || || ||||| ||||| || |||| |||||||||| Sbjct 62924 TCGATCGAGTCAGAAGGCTCAACGTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACG 62983 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 62984 AAAATCTGCAT 62994 >seq55 Length=263441 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 ||||| || | ||| |||||| || ||||| ||||| || | || || || ||||| Sbjct 150833 ACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCCGCCAAAGTCCGGCCATCTTCG 150892 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 | || || || || |||||||||||||| || ||| || ||||| || ||||| Sbjct 150893 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTTGTCCTGA 150952 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 |||||| ||| || || || || ||| | || || || ||||| || ||||| Sbjct 150953 ATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCACGTCCAGCGTAATGGTCTTG 151012 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||||||||| ||||||||| Sbjct 151013 CCCGTCAGGGTCTTGACGAAAATCTGCATT 151042 >seq43 Length=290853 Score = 100 bits (110), Expect = 7e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 ||||| || || ||||| || || | || || ||||| | ||| || || || |||||| Sbjct 97875 TTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATC 97934 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC-GCTTTCACGTTTTC 288404 | |||||| || | || || ||||| || |||||||||||| ||||| || || || Sbjct 97935 AAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTT-ACATTGTC 97993 Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || || || ||| || || ||||| || ||||| || |||| |||||||| || Sbjct 97994 AATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACAAA 98053 Query 288465 TATCTGCAT 288473 |||||||| Sbjct 98054 AATCTGCAT 98062 >seq593 Length=12966 Score = 96.9 bits (106), Expect = 8e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 ||||| || || ||||| || || | || || ||||| | ||| || || || |||||| Sbjct 9110 TTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATC 9169 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC-GCTTTCACGTTTTC 288404 | |||||| || | || || ||||| || |||||||||||| ||||| || || || Sbjct 9170 AAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTT-ACATTGTC 9228 Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || || || ||| || || ||||| || ||||| || |||| || ||||| || Sbjct 9229 AATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTTTTGACAAA 9288 Query 288465 TATCTGCATTAT 288476 |||||||| || Sbjct 9289 AATCTGCATGAT 9300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179625939731674