Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq182 125 2e-23 >seq182 Length=140942 Score = 125 bits (138), Expect = 2e-23 Identities = 675/1059 (64%), Gaps = 55/1059 (5%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||||||||||||||| || ||||||| || ||||||||||| | ||| ||| || Sbjct 107377 CTCTTTGTCTTCACCAGACTGGAAACGCCACTGAATATACTGGTTCGCAGTCTCGTCGAG 107318 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||| |||||||| ||||||||||| ||||| ||||||| ||||| || || Sbjct 107317 GTGCGACTCAATGTGGTGAAAAGCATGCTGAGCCACATAAGCAAAGCGCATGGAAGGGTG 107258 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 ||||| || || |||| | || | || ||||| |||| ||||| || || Sbjct 107257 TTTCCACACCTGACCACTGGTCGGCTCTACTTCACCCGTCAGCATTTTAATCAGCGTCGA 107198 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGT--TCAGCGATACCTG-GGC 333550 || || ||||| || || | ||| |||| | || | ||| | || || | | Sbjct 107197 CTTACCAGCACCGTTGGGACCGAGCACGGCAATAC--GACTCGACAG-GGCACATGTGAC 107141 Query 333551 ATTCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-A 333609 | ||||| | | |||| || |||||||||| | | | || || | Sbjct 107140 TGAAATGTTGTTGATCGATGGTTTGGGTGTGCCCGGATACTGGTA-CGAGCAGTTGGTCA 107082 Query 333610 GCTTCATGATGGCACGGT----CCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG- 333664 | ||||| |||| |||| ||||| | | ||||| || |||||||| Sbjct 107081 GACGAATGAT----CGGTTTACCCTTGTTCTTGATATCAGCAAGGAAACCAGGCTCGGGA 107026 Query 333665 -----GAACTTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGA 333719 ||||| |||| ||| || |||| || ||||||| | | || || Sbjct 107025 AAGACAAACTT-AACGTTGTC--CGACTCG---AGCTCGTAGTAGGCCTTGGCCTCAGGC 106972 Query 333720 CGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCG 333779 || || || |||| ||| ||||| |||||||| ||||||| || | || ||| Sbjct 106971 TTCTGCTCGACAAACTTGGAGAGATTACCCTTGTAAATCTTCAGTTT---GCGAGTTTCA 106915 Query 333780 TAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACG 333839 || || || || ||| || |||| ||| ||||| | |||||||| ||||| || | | Sbjct 106914 TAGTGAATGATGTTGGTACAGACAGTGTCAAGGAAACTAGAGTCGTGCGACACCATAATG 106855 Query 333840 CACGAAACGTCCTT---AAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACA 333896 | | |||| || || | | ||| |||| || ||| ||||| ||| Sbjct 106854 GAAGTCACGT--TTGGCAAACTAG-TCAAATATTGTTCCAACCAAGCAACGTTCTTGACA 106798 Query 333897 GAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGT 333956 | ||||| |||||||| ||||| |||| | | || ||| | | ||| ||||| Sbjct 106797 TCCAAGTGGTTCGTCGGCTCATCAAGTAGTAAAATGTCAGCCTTCTGCAACATGGCACGA 106738 Query 333957 GCAAGAGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAA----TTGGGGCAG-ATT 334011 || || | | |||||| ||||| || |||||||||||| | |||| | | ||| Sbjct 106737 GCTAGCTCCAATTTCATCTTCCAACCACCTGAAAGAGTGCCCACACCCTGGGCCTGCATT 106678 Query 334012 GGCGCTCAATATCAAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAA 334071 ||| | ||| ||||| |||||| | | | || | || | | Sbjct 106677 -----TCAGAAGTAAATCCAACACCAGAAAGAGTATCTTCAACCTCCTTGCGTG---GAG 106626 Query 334072 TGTTTTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGG 334131 | ||| || | | ||||| || |||||| |||| || || || | || || | Sbjct 106625 TATTT---TTCAAATCCTCATCGTTAAGAATGAAATCAACGACAGACAATTCAGCCTCAG 106569 Query 334132 ACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATC-CGCAGAGGGGAACCCT 334190 | | | |||| ||| || || | |||| || | | || || | || || ||| Sbjct 106568 ATGCTTGAAGATTGTGCTCAACAAATACAGTCTTGAGCTCGTCACGGCTA-GGAAAGCCT 106510 Query 334191 TCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCA 334250 || |||||||| ||| ||| |||||||| || || || || || ||||| || || Sbjct 106509 TCGAGCTGACCATTCGAAATGGCGCGCATAAGGGTCGACTTGCCACAACCGTTAGGACCG 106450 Query 334251 CACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTT 334310 ||||||||||| || | |||||||| ||| | || | |||||| || | ||| | Sbjct 106449 CACAGACCGTAACGATGACCACGCTTTAGACGAAGACGGGCATTGTTGAGTAAAATCATA 106390 Query 334311 CCACCATATGCCAGAGAAAATTCACAATCACACAGATCC 334349 || ||||| || || || || ||||| | ||| || ||| Sbjct 106389 CCGCCATAAGCGAGCGAGAACTCACAGTTACAAAGGTCC 106351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102853391986050