Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq55 147 2e-30 seq593 122 9e-23 seq43 116 4e-21 seq157 113 5e-20 seq4 107 2e-18 >seq55 Length=263441 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| |||| | | ||| || || | |||||||||||| ||||| ||||| || || Sbjct 150814 ACCGCCACGCAGACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCCGC 150873 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| ||||||||||| ||| | || || |||||||||||||| || Sbjct 150874 CAAAGTCCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGG 150933 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || ||||| || || ||| || | |||| || ||||| Sbjct 150934 AATCCCTTCCTTGTCCTGAATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCAC 150993 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||||||||| |||| || || |||||||| |||||||| Sbjct 150994 GTCCAGCGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCATTTT 151044 >seq593 Length=12966 Score = 122 bits (134), Expect = 9e-23 Identities = 142/190 (75%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 |||||||||||||| || || | | || | |||||||| |||||||| ||| | || Sbjct 9110 TTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATC 9169 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 | ||||||||||| || ||||| ||||| || || || ||||| ||||||||| || Sbjct 9170 AAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGTCA 9229 Query 64376 A--CTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | |||| | || | ||||| || | || | ||||||||| ||||| ||||| || | Sbjct 9230 ATGCTGTCTGAC--GGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTTTTGACAA 9287 Query 64434 AAATTTGCAT 64443 |||| ||||| Sbjct 9288 AAATCTGCAT 9297 >seq43 Length=290853 Score = 116 bits (128), Expect = 4e-21 Identities = 141/190 (74%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 |||||||||||||| || || | | || | |||||||| |||||||| ||| | || Sbjct 97875 TTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATC 97934 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 | ||||||||||| || ||||| ||||| || || || ||||| ||||||||| || Sbjct 97935 AAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGTCA 97994 Query 64376 A--CTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | |||| | || | ||||| || | || | ||||||||| ||||| || || || | Sbjct 97995 ATGCTGTCTGAC--GGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACAA 98052 Query 64434 AAATTTGCAT 64443 |||| ||||| Sbjct 98053 AAATCTGCAT 98062 >seq157 Length=157498 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| || |||| ||||| ||||| || |||||||| || | || || |||| || Sbjct 62785 CACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCCTC 62844 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | ||||||||| ||| ||||||| || |||||||| || ||||||||||| || || || Sbjct 62845 CAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTG 62904 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||||| || || | | ||| | || || || | ||| | ||||| Sbjct 62905 AATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCAACGTCAAGAGTGATTGTCTT 62964 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || |||||||| || |||||||| ||||| Sbjct 62965 TCCCGTCAAAGTCTTGACGAAAATCTGCAT 62994 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| || |||| ||||| ||||| || |||||||| || | || || ||||||| Sbjct 62101 CACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAAGTACGTCCGTCTTC 62160 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | ||||||||| ||| ||||||| || |||||||| || ||||||||||| || || || Sbjct 62161 CAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTG 62220 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||||| || || | | || | || || || | ||||| ||||| Sbjct 62221 AATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCTACATCGAGAGTTATAGTCTT 62280 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| || || ||||| || ||||| Sbjct 62281 CCCCGTCAACGTCTTGACGAAGATCTGCAT 62310 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | | ||| || || | ||||| || || || |||||||| || Sbjct 62311 ACCTCCACGCAGACGCAACACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCT 62370 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || |||| || | ||||||||| ||| | || || || |||||||| || || Sbjct 62371 CAGAGTACGTCCGTCCTCCAACTGCTTGCCAGCAAAGATTAGACGTTGCTGGTCAGGTGG 62430 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||| || || | | ||| | || || Sbjct 62431 AATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCTAC 62490 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||||| ||||| || |||||||| || |||||||| ||||| Sbjct 62491 GTCGAGAGTTATAGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62538 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | | ||| || |||| ||||| || || || |||||||| || Sbjct 62539 ACCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCACT 62598 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || |||| || | ||||||||| ||| | || || || ||||| || || || Sbjct 62599 CAAAGTACGTCCGTCCTCCAACTGCTTGCCAGCAAAGATTAGACGTTGCTGATCAGGGGG 62658 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||| || || | | || | ||||| Sbjct 62659 AATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCCAC 62718 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||||| ||||| || |||||||| || |||||||| ||||| Sbjct 62719 ATCGAGAGTTATAGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62766 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| |||| | | ||| || || | ||||| ||||| |||||||| || || Sbjct 62995 ACCGCCACGCAGACGCAACACAAGGTGGAGGGTCGACTCTTTCTGAATGTTATAGTCGCT 63054 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || |||| || | ||||||||||||| | || || || |||||||| || || Sbjct 63055 CAACGTACGACCGTCCTCCAACTGCTTGCCGGCAAAGATTAGACGTTGCTGGTCAGGGGG 63114 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||| || || | | || | || || Sbjct 63115 AATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAAC 63174 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTA 64447 || | ||| | ||||| || |||| || ||||| ||||| |||||| || Sbjct 63175 ATCAAGAGTGATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCATTGTA 63226 >seq4 Length=584709 Score = 107 bits (118), Expect = 2e-18 Identities = 596/946 (63%), Gaps = 17/946 (2%) Strand=Plus/Minus Query 154583 CACAGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGC 154642 ||| |||||||||||||| ||||| | ||| || ||| | |||| || | ||| Sbjct 120052 CACCGACGCCAAGTTGCACACGGCCACTTCGTCCGAAGACGTATATTCCATCACTTCACA 119993 Query 154643 GCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGC 154702 |||||||||||| |||| || ||||| ||||||| ||| ||||||||| ||| || Sbjct 119992 GCACAAATTACTCGATCGGATCGTGCCAAGGTTTTGCTGGTTCGATTTGCGGTTCGCGGC 119933 Query 154703 GTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAA 154762 |||||| || | ||||| ||| |||||| || | || | || | || || || Sbjct 119932 GTCTTTATAGAGCATGTAAGGGACGCCCGTCTCAATCTGAGCGTCGAGGAT--CGCAAAC 119875 Query 154763 CAGACTT--CGCGC----CTCAACTTGACAAGTAAATCGATTTTCGCTCTCATATTGTTC 154816 || | || |||| || |||| | | | || ||| || || || | Sbjct 119874 CATAGTTGCTGCGCATTGATCGTCTTG-CGGGCA---CGGCCTTCCTGTTCGTACTGGAC 119819 Query 154817 GTACAGTTTTTCAAACTCTAAACTGTACACGTCCG-ACAAACCGGGACAGCGGTCGGGAC 154875 ||||| |||||| | || | |||| || ||| ||| || || ||||| Sbjct 119818 GTACAAGGCCTCAAACGCGTCACCCCA-ACGTTCGTACAGACCCGGCGCTTCGTTGGGAC 119760 Query 154876 ACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACA 154935 | | | |||| | | || || ||||| |||||||| | |||||| ||||||| Sbjct 119759 AAAAGAGACTCCACGTGCCATTGGCTTCCACGCGCTTCATAAAGAGATCCGGGACCCACA 119700 Query 154936 AAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCA 154995 | || | |||||||| || || | || ||| |||| | || | | Sbjct 119699 AGGCAAAAAACAAATCCCGAGCACGATGCAACTCGTTGCCGTGGTTTTTCCGCAACTCTA 119640 Query 154996 AAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTT 155055 ||| ||| | | ||||||||||| ||||||| ||| | ||| | || ||||||||| | Sbjct 119639 GAAACTCAAACACATCGGCGTGCCAGGGCTCTAGATAGATGGCAAACGAGCCTTTGCGCT 119580 Query 155056 T---TCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCA 155112 | || |||||||| |||| ||| | | |||| | |||||||||| ||| | Sbjct 119579 TCCCACCACCTTGATCAACGTACCGCGCCGTGTCATTGAAGACGCGCAACATTGGAATGA 119520 Query 155113 CGCCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAA 155172 ||| | | || ||||| ||||| || || |||| | ||||| || || | Sbjct 119519 TGCCATTCGACGACCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCACGAATGTTGTGCA 119460 Query 155173 CATTAACGCCCAAACCTCCGCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGT 155232 | | | || | || ||| | |||| || || |||||| | | | || || | Sbjct 119459 TACTGATCCCGATCCCGCCGGCCCATTTCGAAATGCACGCACATTGCTTGAGCGTGTCAT 119400 Query 155233 ACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTT 155292 | || |||| || ||| |||| || | ||| | || ||||| || | || || Sbjct 119399 AAATGCCTTCAATCGAGTCATCTTGCATGGCCAAGAGAAAGCACGACGAGAGCTGTGGAC 119340 Query 155293 GAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGTTA 155352 |||| ||| || ||| | || || | ||||| ||||| | ||| | | | | Sbjct 119339 GAGGAGTGCCTGCGTTAAAGAGCGTCGGTGTCGCGTGGGTAAAGAATTTCTGCGACATGA 119280 Query 155353 AGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCA 155412 | || || || | ||||| | ||||| | ||| || || | ||||| || | Sbjct 119279 GCTCATACGTCTCAAGCGCGGCCTTGATGTCGTGCTTGTGGATGCCCAATGCCACACGGA 119220 Query 155413 TCAGCATGTGTTGAATGCGCTCCGCAACGCGGCCGTTGATGCGCTTTAAGTACCCATTTT 155472 ||||| ||||| ||||| | || ||| |||| || | |||||| | Sbjct 119219 GAAGCATCTGTTGCGGACGCTCGACGACTTTGCCATTGACACGAAAGAGGTACCCTCGCT 119160 Query 155473 CCAAAGTTTTATACGCAAAATACTTGTATTCGTAGTCTCGTTTGTA 155518 | | |||||| || |||| || | |||||| |||| || | ||| Sbjct 119159 CGAGCGTTTTAAACCCAAAGTAGTCGTATTCAAAGTCCCGGTCGTA 119114 Score = 82.4 bits (90), Expect = 8e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 154031 AAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTC 154090 ||| ||||| ||||| |||||||| |||| ||| || || ||||| | |||||| Sbjct 120607 AAACTCGCCAGCCAAGACGCGGCGATTGTACATGTTGGACGTAAAGGGCTCAATCGATTC 120548 Query 154091 GTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTT 154150 ||||||||| || |||||||| || | || |||||||| ||| ||||| | ||||| Sbjct 120547 GTTGTTGCCCAAGATTTGAGCGGTCGACGCCGTGGGCATGGGCGCGACCAAGAGCGAGTT 120488 Query 154151 TCG 154153 || Sbjct 120487 CCG 120485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499633039610520