Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq4 235 5e-57 >seq4 Length=584709 Score = 235 bits (260), Expect = 5e-57 Identities = 500/741 (67%), Gaps = 4/741 (1%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || || ||||| || || ||||| || || || |||||| | || ||||| || || Sbjct 119306 GCGACACCGACGCTCTTTAACGCAGGCACTCCTCGTCCACAGCTCTCGTCGTGCTTTCTC 119365 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | | | ||||| || || |||| |||| |||||| | |||||| | Sbjct 119366 TTGGCCATGCAAGATGACTCGATTGAAGGCATTTATGACACGCTCAAGCAATGTGCGTGC 119425 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 || || |||| || || || |||||||||||| | ||| || | ||||||| | Sbjct 119426 ATTTCGAAATGGGCCGGCGGGATCGGGATCAGTATGCACAACATTCGTGCCACCAACAGC 119485 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||||| || || || || | || || ||| || | || ||| | || |||||||| Sbjct 119486 TACATCCGAGGCACGAACGGGTCGTCGAATGGCATCATTCCAATGTTGCGCGTCTTCAAT 119545 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || ||||||| ||||| || || |||||||||| | | || || || || || ||||| Sbjct 119546 GACACGGCGCGGTACGTTGATCAAGGTGGTGGGAAGCGCAAAGGCTCGTTTGCCATCTAT 119605 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || |||||||||||||| || ||| | || | || |||| || |||||||||||| Sbjct 119606 CTAGAGCCCTGGCACGCCGATGTGTTTGAGTTTCTAGAGTTGCGGAAAAACCACGGCAAC 119665 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | | || | || | || | || | ||||| || || || |||||||| Sbjct 119666 GAGTTGCATCGTGCTCGGGATTTGTTTTTTGCCTTGTGGGTCCCGGATCTCTTTATGAAG 119725 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 ||||| || || | | |||||||| ||||||||||| ||| || || |||| | Sbjct 119726 CGCGTGGAAGCCAATGGCACGTGGAGTCTCTTTTGTCCCAACGAAGCGCCGGGTCTGTAC 119785 Query 94372 G-ACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGC 94430 | ||||| | | |||| ||||| | |||||| | | |||||| | | ||| || Sbjct 119786 GAACGTTGGGGTGACGCG-TTTGAGGCCTTGTACGTCCAGTACGAACAGGAAGGCCGTGC 119844 Query 94431 CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGAC 94490 | | ||| || |||| | | || ||| | |||| | |||| ||| | ||||| Sbjct 119845 CCGCAAGACGATCAATGCGCAGCAACTATGGTTTGCGATCCTCGACGCTCAGATTGAGAC 119904 Query 94491 GGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCT 94550 ||| || ||||| | | || ||| | | ||| ||| || |||||||| |||| Sbjct 119905 GGGCGTCCCTTACATGCTCTATAAAGACGCCGCGAACCGCAAATCGAACCAGCAAAACCT 119964 Query 94551 CGGGGTGATCAAGAGCTCG-AATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACG 94609 || |||| || | | ||| ||||| || | | || ||||| ||| |||||| Sbjct 119965 TGGCACGATC-CGATCGAGTAATTTGTGCTGTGAAGTGATGGAATATACGTCTTCGGACG 120023 Query 94610 AGATTGCTGTGTGTAACCTGG 94630 | | || ||||| ||| ||| Sbjct 120024 AAGTGGCCGTGTGCAACTTGG 120044 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148 ||| |||| | || || |||||||||||||| || || || || ||| | ||||||||| Sbjct 120488 AACTCGCTCTTGGTCGCGCCCATGCCCACGGCGTCGACCGCTCAAATCTTGGGCAACAAC 120547 Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAA 95183 || ||| | || ||||| || |||||| ||||||| Sbjct 120548 GAATCGATTGAGCCCTTTACGTCCAACATGTACAA 120582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494711555452680