Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq157 122 9e-23 seq593 107 2e-18 seq43 105 7e-18 seq55 102 8e-17 seq1 87.8 2e-12 >seq157 Length=157498 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| |||||| || | || | | | ||||| || |||||||| ||||||||| Sbjct 62996 CCGCCACGCAGACGCAACACAAGGTGGAGGGTCGACTCTTTCTGAATGTTATAGTCGCTC 63055 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||| | || || |||| | |||||||||| || ||||| || || Sbjct 63056 AACGTACGACCGTCCTCCAACTGCTTGCCGGCAAAGATTAGACGTTGCTGGTCAGGGGGA 63115 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| || || || || | | || | | ||||| | ||| || Sbjct 63116 ATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCAACA 63175 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || ||||| || ||||||||||||||||| Sbjct 63176 TCAAGAGTGATTGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCAT 63222 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||||| || | || | | | |||||||| || ||||||||||| ||| Sbjct 62540 CCTCCACGCAGACGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCACTC 62599 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| |||||| | || || || | | |||||||||| || || || || || Sbjct 62600 AAAGTACGTCCGTCCTCCAACTGCTTGCCAGCAAAGATTAGACGTTGCTGATCAGGGGGA 62659 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| || || || || | | || | | ||||| | |||||| Sbjct 62660 ATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCCACA 62719 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||| || | || || || |||| ||| || || |||||||||||| || Sbjct 62720 TCGAGAGTTATAGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATGCCT 62770 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||||| || | || | | | |||||||| || ||||||||||||||| Sbjct 62312 CCTCCACGCAGACGCAACACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTC 62371 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| |||||| | || || || | | |||||||||| || ||||| || || Sbjct 62372 AGAGTACGTCCGTCCTCCAACTGCTTGCCAGCAAAGATTAGACGTTGCTGGTCAGGTGGA 62431 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| || || || || | | || | | ||| | | ||| || Sbjct 62432 ATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCTACG 62491 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || || |||| ||| || || ||||||||||| Sbjct 62492 TCGAGAGTTATAGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62538 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | | | ||||| || || |||||||||||||| Sbjct 62767 GCCTCCACGCAGGCGCAACACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCT 62826 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || |||||| |||||| | || || || | | | || ||||| || ||||| || || Sbjct 62827 CAGAGTACGGCCGTCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGG 62886 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| || || || || | | || | | ||| | | ||| || Sbjct 62887 AATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCAAC 62946 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || |||| ||| || || ||||||||||| Sbjct 62947 GTCAAGAGTGATTGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62994 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || | || | | | ||||| || || ||||||||||||||| Sbjct 62084 CCACCACGCAGGCGCAACACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTC 62143 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||| || | || || || | | | || ||||| || ||||| || || Sbjct 62144 AAAGTACGTCCGTCTTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGA 62203 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| || || || || | | || | | ||||| | ||| || Sbjct 62204 ATTCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCGGAAGGCTCTACA 62263 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || || |||| || || || || |||||||| Sbjct 62264 TCGAGAGTTATAGTCTTCCCCGTCAACGTCTTGACGAAGATCTGCAT 62310 >seq593 Length=12966 Score = 107 bits (118), Expect = 2e-18 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGT--ACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 ||||||||||||||||||| | || ||| ||| || || ||||| || || | | | Sbjct 9108 CCTTTTGAATGTTGTAGTC-CGCA-AGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAA 9165 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 ||| | |||||| ||||| || || || ||||| ||||| |||||| || |||| ||| Sbjct 9166 GATCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATT 9225 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 || | | | |||| | || ||||| || | ||| | || || || |||| ||||| | Sbjct 9226 GT-CAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTTTTGA 9284 Query 138602 CAAAAATCTGCATG 138615 |||||||||||||| Sbjct 9285 CAAAAATCTGCATG 9298 >seq43 Length=290853 Score = 105 bits (116), Expect = 7e-18 Identities = 154/211 (73%), Gaps = 9/211 (4%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGT--ACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 ||||||||||||||||||| | || ||| ||| || || ||||| || || | | | Sbjct 97873 CCTTTTGAATGTTGTAGTC-CGCA-AGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAA 97930 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 ||| | |||||| ||||| || || || ||||| ||||| |||||| || |||| ||| Sbjct 97931 GATCAAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATT 97990 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 || | | | |||| | || ||||| || | ||| | || || || |||| || || | Sbjct 97991 GT-CAATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGA 98049 Query 138602 CAAAAATCTGCATGGCT---TATAATATTAT 138629 |||||||||||||| || |||| ||| || Sbjct 98050 CAAAAATCTGCATGACTCCCTATAGTATGAT 98080 >seq55 Length=263441 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| |||||| || | || | | || || || ||||| |||||||| | Sbjct 150815 CCGCCACGCAGACGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCCGCC 150874 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || ||||| || || || | | |||| |||||||| ||||| || || Sbjct 150875 AAAGTCCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGA 150934 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||||| ||||| | ||||| | | | | || | | |||||| Sbjct 150935 ATCCCTTCCTTGTCCTGAATTTTCTGTTTGACATTGT-CAATGCTATCCGAGGGCTCCAC 150993 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | || || || ||||| || || || ||||||||||| Sbjct 150994 GTCCAGCGTAATGGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 151041 >seq1 Length=763219 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 52614 GAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGC 52673 || || ||||| || ||| | ||||| | | | |||| |||||||||||| | ||| Sbjct 607118 GATGCTGTGGCGATTGAACACGAGTTCGTGCGTGACTCGCTCCCGGTCGAGCTGATTGGC 607059 Query 52674 ATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAG 52733 |||||| || ||||||| |||||| || |||||||| ||||||||| | | Sbjct 607058 ATGAACTCGGGCCTCATGTGCCTGTACATTGAATTTGTGGCTGATCGTCTGCTTTACTCG 606999 Query 52734 CTCGG-GCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTC 52792 || || | | || ||| || | | || || || || || | ||| ||| || || Sbjct 606998 CTGGGAGTATCC-AAGATCTACCATGCAAAGAACCCATTCGATTGGATGGACATGATCTC 606940 Query 52793 GCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || |||||||||| |||||||| ||||| || || || || || Sbjct 606939 TCTCCAGGGCAAGACGAACTTTTTTGAGAAACGCGTTGGAGAATA 606895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496250719223760