Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq55 118 1e-21 seq157 104 2e-17 seq593 98.7 9e-16 seq43 95.1 1e-14 >seq55 Length=263441 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||||||| | || | ||| || ||||| ||||||||||| || ||| || || | Sbjct 150827 CGCAACACGAGGTGCAGCGTCGATTCTTTCTGAATATTGTAGTCCGCCAAAGTCCGGCCA 150886 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| |||||||| ||||| || || || |||||| Sbjct 150887 TCTTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATCCCTTCCTTG 150946 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| |||||||| |||| | || | | | |||| ||| || || | || | Sbjct 150947 TCCTGAATTTTCTGTTTGACATTGTCAATGCTATCCGAGGGCTCCACGTCCAGCGTAATG 151006 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || || ||||||||||| Sbjct 151007 GTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 151041 >seq157 Length=157498 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||||||| | || | || |||||||| ||||| || || |||| || ||| ||| Sbjct 63008 CGCAACACAAGGTGGAGGGTCGACTCTTTCTGAATGTTATAGTCGCTCAACGTACGACCG 63067 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | ||| || || || |||| | || ||||| || || || || || |||||| Sbjct 63068 TCCTCCAACTGCTTGCCGGCAAAGATTAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTG 63127 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| || |||||||| | ||||| ||| | ||| | | ||| || || | || | Sbjct 63128 TCCTGAATCTTCTGCTTCACGTTGT-CGATCGAGTCGGAAGGCTCAACATCAAGAGTGAT 63186 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || ||||| || ||||||||||||||||| Sbjct 63187 TGTCTTTCCCGTCAGCGTCTTTACAAAAATCTGCAT 63222 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||||||| | || | || ||||| || || || ||||| || | || || || Sbjct 62552 CGCAACACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCACTCAAAGTACGTCCG 62611 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | ||| || ||||| |||| | || |||||||| || || || || |||||| Sbjct 62612 TCCTCCAACTGCTTGCCAGCAAAGATTAGACGTTGCTGATCAGGGGGAATTCCTTCCTTG 62671 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| || |||||||| | ||||| ||| | ||| | | ||| || |||| || | Sbjct 62672 TCCTGAATCTTCTGCTTCACGTTGT-CGATCGAGTCGGAAGGCTCCACATCGAGAGTTAT 62730 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || || || |||| ||| || || |||||||||||| || Sbjct 62731 AGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATGCCT 62770 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||||||| | || | || ||||| || || || ||||| |||| || || || Sbjct 62324 CGCAACACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGTCCG 62383 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | ||| || ||||| |||| | || ||||| || || || || || |||||| Sbjct 62384 TCCTCCAACTGCTTGCCAGCAAAGATTAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTG 62443 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| || |||||||| | | |||| | ||| | | ||| || |||| || | Sbjct 62444 TCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCTACGTCGAGAGTTATA 62503 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || |||| ||| || || ||||||||||| Sbjct 62504 GTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62538 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||||||| | || | || |||||||| || || ||||| |||| || || || Sbjct 62780 CGCAACACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCG 62839 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | ||| || ||||| | || | || ||||| || || || || || |||||| Sbjct 62840 TCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTG 62899 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| || |||||||| | | |||| | ||| | | ||| || || | || | Sbjct 62900 TCCTGAATCTTCTGCTTCACGTTATCGATCGAGTCAGAAGGCTCAACGTCAAGAGTGATT 62959 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || |||| ||| || || ||||||||||| Sbjct 62960 GTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 62994 >seq593 Length=12966 Score = 98.7 bits (108), Expect = 9e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 |||||||| ||||| || | | | || ||| || || || || ||||| ||||| Sbjct 9110 TTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATC 9169 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || |||||||| || || || ||||| ||||||||| |||||||||||| | | || Sbjct 9170 AAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGTCA 9229 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||| | || || || | || | || ||||| |||| ||||| |||||| Sbjct 9230 ATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTTTTGACAAAA 9289 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 9290 ATCTGCATG 9298 >seq43 Length=290853 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 |||||||| ||||| || | | | || ||| || || || || ||||| ||||| Sbjct 97875 TTTTGAATGTTGTAGTCCGCAAGTGAACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATC 97934 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || |||||||| || || || ||||| ||||||||| |||||||||||| | | || Sbjct 97935 AAACGCTGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGGATTTTCTGCTTTACATTGTCA 97994 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||| | || || || | || | || ||||| |||| || || |||||| Sbjct 97995 ATGCTGTCTGACGGTTCCACGTCCAGCGTAATGGTCTTGCCCGTCAACGTCTTGACAAAA 98054 Query 127106 ATCTGCATGGCT 127117 ||||||||| || Sbjct 98055 ATCTGCATGACT 98066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475489607899920