Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4 122 1e-22 seq1 100 3e-16 >seq4 Length=584709 Score = 122 bits (134), Expect = 1e-22 Identities = 356/545 (65%), Gaps = 5/545 (1%) Strand=Plus/Minus Query 116640 GGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTC 116699 ||| || || |||| ||||||| ||| | |||||||||| | |||||| | || Sbjct 119845 GGCACGGCCTTCCTGTTCGTACTGGACGTACAAGGCCTCAAACGCGTCACCCCAACGTTC 119786 Query 116700 TGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCG 116759 | || || || || | | ||||| |||||| ||| ||| | || || || Sbjct 119785 GTACAGACCCGGCGCTTCGTTGGGACAAAAGAGACTCCACGTGCCATTGGCTTCCACGCG 119726 Query 116760 CTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGA-GCTTCTT 116818 |||||| ||||| || |||| ||| | || | || | ||||||| ||| || || Sbjct 119725 CTTCATAAAGAGATCCGGGACCCACAAGGCAAAAAACAAATCCCGAGCACGATGCAACT- 119667 Query 116819 CATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCA 116878 | | || || || |||||||| | ||| || | | ||| |||||||| || || | Sbjct 119666 CGTTGCCGTGGTTTTTCCGCAACTCTAGAAACTCAAACACATCGGCGTGCCAGGGCTCTA 119607 Query 116879 GGTACACCGCGATTGACCCCTTGCGA---CGACCAGCCTGGTTTACATACCTCGCCGTTG 116935 | || | || | || || ||||| | |||| | || | || |||| |||||| Sbjct 119606 GATAGATGGCAAACGAGCCTTTGCGCTTCCCACCACCTTGATCAACGTACCGCGCCGTGT 119547 Query 116936 CGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATAC 116995 | || || ||||| | |||||||||||| |||| || || || || || || || Sbjct 119546 CATTGAAGACGCGCAACATTGGAATGATGCCATTCGACGACCCGTTCGTGCCTCGGATGT 119487 Query 116996 GAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGA 117055 ||| |||| | | | ||| || || || || || || ||||| || || | Sbjct 119486 AGCTGTTGGTGGCACGAATGTTGTGCATACTGATCCCGATCCCGCCGGCCCATTTCGAAA 119427 Query 117056 TTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGA 117115 | || || | | |||| || | || || || || ||||||||| | | | || | Sbjct 119426 TGCACGCACATTGCTTGAGCGTGTCATAAATGCCTTCAATCGAGTCATCTTGCATGGCCA 119367 Query 117116 TGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCG 117175 ||| ||||| ||| | ||||| | || || || ||||| ||||| || ||||||| Sbjct 119366 AGAGAAAGCACGACGAGAGCTGTGGACGAGGAGTGCCTGCGTTAAAGAGCGTCGGTGTCG 119307 Query 117176 CGTGG 117180 ||||| Sbjct 119306 CGTGG 119302 >seq1 Length=763219 Score = 100 bits (110), Expect = 3e-16 Identities = 349/539 (65%), Gaps = 13/539 (2%) Strand=Plus/Plus Query 127221 CCAGCTTGCC-GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||||| | ||| || || || || ||||| || ||||| ||||| || | ||| | Sbjct 606883 CCAGCTTTCGAGTATTCTCCAACGCGTTTCTCAAAAAAGTTCGTCTTGCCCTGGAGAGAG 606942 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 127339 || | ||||| |||| ||||||||||||| | | || | | || || | | Sbjct 606943 ATCATGTCCATCCAATCGAATGGGTTCTTTGCATGGTAGATCTTGGATACTCCCAGCGAG 607002 Query 127340 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 127399 | || |||||||| | || | ||||||||| |||| | |||||||| || Sbjct 607003 TAAAGCAGACGATCAGCCACAAATTCAATGTACAGGCACATGAGGCCCGAGTTCATGCCA 607062 Query 127400 ATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGT 127459 || || | ||||||| ||| | |||| | | ||||| ||||||| || || Sbjct 607063 ATCAGCTCGACCGGGAGCGAGTCACGCACGAACTCGTGTTCAATCGCCACAGCATCGCGA 607122 Query 127460 ACGATGGCGTGAATAGTGTCCACCC-CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCAC 127518 | ||| |||| | || | ||| | | | | | | ||| |||| | | Sbjct 607123 ATGATTTCGTGCACGCGGTATTCTGGCAGCT---TGGTGACCAAT-TTG--GAGTACAAA 607176 Query 127519 AG-----CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCAC 127573 || |||| || ||| | ||||||||| ||| || || || || || |||| Sbjct 607177 AGGCACGCAAAGTCCGTGTGCATACCCTCGTCCCGGCTAATAAGCTCGTTTGAAAAGCTT 607236 Query 127574 AGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAG 127633 ||||| ||||| | ||| |||||||| | ||| || || | || |||||||||||||| Sbjct 607237 AGACCAGGCATTAAACCGCGCTTCTTGAGCCAAAAGATGGAGCAGAATGAGCCAGAGAAA 607296 Query 127634 AAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTA 127693 || || || || || || || || || || || || | | |||| | | || | Sbjct 607297 AAAATGCCTTCAACTGCAGCAAAGGCCAAAAGCCGTTCTGGATAGGAAGAGACCCGTGGA 607356 Query 127694 TCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 || ||||||||| ||||| || || ||||| || || |||| |||| ||| || Sbjct 607357 TCGCACCACTTCAGAGCCCAGTGCGCTTTTTTGGTGACGCAAGGGATAGTCTCGATAGC 607415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613492759574280