Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4 120 5e-22 >seq4 Length=584709 Score = 120 bits (132), Expect = 5e-22 Identities = 408/623 (65%), Gaps = 41/623 (7%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTACAT 203895 ||| ||||| || |||||||| |||| |||| || | | | || |||||||| Sbjct 120967 CTTATCCACGGTAAACTGAATCGCGT---CGGCTTTCGGTCGTCCCCGCATGTAGTACAT 120911 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||| ||||| || || || | |||| |||| | ||||||||| | |||||||| | | Sbjct 120910 GCCCGTCTTGAGCCCTTTTTTCCACGCGTAAAAGTGCATGGACGTGAGTTTGCTAATCGT 120851 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 ||||| || ||||||||||||| || || || || || ||| ||||| ||||| | Sbjct 120850 CGGGTCCGCAATGTGAATGTTCAACGATTGACTCTGACAAAT-AAACGCGCCACGATCCG 120792 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAA---------CA 204065 ||| || || || | || ||| ||| ||||||||||| |||||| | || Sbjct 120791 CGGACAGATCGAGCACGGCCTTTTGCTTGATCTCCCACACTGTCTTGTACTTTTCTTTCA 120732 Query 204066 CGTC-TCTGG-TGTGTTGAGGCACATC-TTCCCACGTCCTGATCGAGCCGTTGTCGGCCA 204122 || | ||||| ||| | || ||| || |||| || | | |||| || Sbjct 120731 CGGCATCTGGCAGTG-CGTGG---ATCTTTTGCACG----GACCCA-CCGTCGT------ 120687 Query 204123 TCAG--TCTCA-TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCA 204179 |||| ||| | ||| | | | ||| |||||||| |||||||| || || Sbjct 120686 TCAGAATCTGATTCCGCACTTGGGGCGTCCAGATGCCCAATTCAATCAGCTCTTTCATCA 120627 Query 204180 GGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGG 204239 | | ||| | |||| ||| || || | || || | || || ||| |||| | Sbjct 120626 GATACTTGTTTACGATCGTAAACTCGCCAGCCAAGACGCGGCGATTGTACATGTTGGACG 120567 Query 204240 TGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGG 204299 | || || || | || ||||||||||| || || |||||||| ||||||||||||| Sbjct 120566 TAAAGGGCTCAATCGATTCGTTGTTGCCCAAGATTTGAGCGGTCGACGCCGTGGGCATGG 120507 Query 204300 GAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCC 204359 | || | | || ||||| || | || | | |||| | |||||| | | || Sbjct 120506 GCGCGACCAAGAGCGAGTTCCGGAGCCCATGCTGCATGACCTTTTCCTTCAGTGCCGCCC 120447 Query 204360 AGTC---GTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGAC 204416 | || | | || || | |||||||||||||| || |||||||| ||||||| Sbjct 120446 AATCCCAGAGGCCCGATGACGGCGTGACGCCCCACATGTCAAATTGAAAGATCCCTTGAC 120387 Query 204417 TGACTGGGCTGCCCTTGTACGTC 204439 | | || |||||| ||||| Sbjct 120386 TCGCGGGCGACCCCTTGAACGTC 120364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795136484034480